Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00652 ATGGCCGAGTCAATTAGCACCATTAAAGCTTGGACTTACTCAGAATACGGCAACGCAGTTGATGTTCTAAAATTTGATACAAACGTGGCTTTACCTGATGTGAAAGATGATCAAGTTCTCATCAAAGTTGCTGCTGCTTCTCTTAATCCCATTGATTATAAGAGATTGAATGGTCTCTTCAAAGCCTCCGACTCTCCTTTACCGACTGCTCCGGGGTATGATGTATCTGGAGTTGTGGTTAAGGTAGGGAGTGAAGTGAAGAAATTTAAGGTTGGGGATGAAGTTTATGGTGATATCAATGAGAAAGCCTTGGAGTATCCAAAGGTGATTGGTTCACTGGCTGAGTATACTACTGCAGAAGAGAAAGTGTTGGCTCTCAAGCCAGAGAATCTGAGCTTTGCTGAAGCTGCTAGTCTTCCTTTAGCAATTGAGACTGCTTATGAAGGCCTTGAACGAGCTGGCTTCTCTGCTGGTAAATCTATACTTGTGCTTGGTGGTGCTGGTGGAGTTGGAACCCATGTCATTCAGCTTGCCAAGCATGTTTTCGGCGCTTCGAAAGTAGCAGCAACGTCTAGCACCAAGAAACTAGAATTGTTGAGCAAGTTAGGAGCTGATTTGGCTATTGATTATACAAAGGAGAATTTTGAAGACCTGCCTGAGAAGTTTGACGTGGTGTTTGATACAGTAGGGGAAACTGAGAAGGCATTCAAGGCTCAGAAAGAAGGTGGCAAAGTTGTCACAATTGTACCACCAGGAGTTCCACCAGCAATACTCTTCATACTTACTTCTACTGGGGCTATCTTAGAGAAACTAAAACCTTACTTGGAGACTGGAAAGGTGAAGCCAGTGCTTGATCCCAACACTCCCTTTCCATTTTCTCAAGCTCTTGAAGCATTTTCCTATCTCCAAACCGGCAGAGTTACTGGAAAACTAGTCATCCATCCCATACCATGA 954 0.4361 MAESISTIKAWTYSEYGNAVDVLKFDTNVALPDVKDDQVLIKVAAASLNPIDYKRLNGLFKASDSPLPTAPGYDVSGVVVKVGSEVKKFKVGDEVYGDINEKALEYPKVIGSLAEYTTAEEKVLALKPENLSFAEAASLPLAIETAYEGLERAGFSAGKSILVLGGAGGVGTHVIQLAKHVFGASKVAATSSTKKLELLSKLGADLAIDYTKENFEDLPEKFDVVFDTVGETEKAFKAQKEGGKVVTIVPPGVPPAILFILTSTGAILEKLKPYLETGKVKPVLDPNTPFPFSQALEAFSYLQTGRVTGKLVIHPIP 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00652 317 Pfam Alcohol dehydrogenase GroES-like domain 37 99 IPR013154 -
Vifa5g00652 317 CDD MDR_like_2 9 313 - -
Vifa5g00652 317 Gene3D - 150 264 - -
Vifa5g00652 317 SMART PKS_ER_names_mod 18 313 IPR020843 GO:0016491
Vifa5g00652 317 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 5 317 IPR044626 GO:0016628
Vifa5g00652 317 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 131 283 IPR036291 -
Vifa5g00652 317 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 158 179 IPR002364 GO:0008270|GO:0016491
Vifa5g00652 317 SUPERFAMILY GroES-like 6 165 IPR011032 -
Vifa5g00652 317 Pfam Zinc-binding dehydrogenase 202 313 - -
Vifa5g00652 317 Gene3D - 15 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00652 Vifa-Chr5 168410699 168411816 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00652 68 254 Monolignol Biosynthesis Gene Families AT4G37980 26.606 4.85e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00652 K18980 - gmx:100817947 488.034