Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00651 ATGGGAGTTCACGGTCTCTGGGAACTTCTCTCCCCCGTCGGTCGCCGTGTCTCCGTCGAGACCCTCGCCGGTAAAACCCTAGCCATTGACGCGAGCATTTGGATGGTACAGTTTATCAAAGCGATGCGTGACGAGAAAGGTGAAATGGTTCGCAACGCTCATTTGCTTGGATTCTTCCGTCGCATTTGCAAGCTCTTGTTCCTAAGGACTAAGCCTGTCTTCGTCTTTGACGGTGGAACGCCTGCACTCAAGCGCCGCACTGTTATTGCTCGTCGGAGACAGCGCGATGTTTCGCAAGCTAAAGTTCGAAAGACTGCCGAGAAATTGCTTCTCAATCACTTGAAGGCAATGAGGTTGAAGGAACTGGCTGATGATATTAAGAACCAGAAACTAACGCAAAAGAGTGTCACAAAGTCCCAGAAAAAATCTAATCAGATGGACTTTGTTGGCAATGATTTAGGAAAAAGTCACACGAAAGAGCTAGATGAAATGCCTGCAGCTACGTCTCTGGCTAAGGGCGACAGAAATCTATCACAGACTAAAATTACAACAAGGTGCAACCAAGAGGAGCTTGATGAAATGTTGGCAGCATCTATAGCTGCAGAGGAAAATGAAATACGATCCAGAGAAGGAGGGACATCTACTGTAATTAATTCTTCAGATGCAGATGAAGAGACGATACTGCCTACAGCAAATGGTGAAGTTGATTTAGCTGTTTTAGCTGCTTTGCCACAATCAATGCAACTTGATATTCTTGCGCAGCTTAAAGGCAAGAAAACAGGACTACTGAAGCAAGTTGACAACCAGATAAGACATGAGGTCAGTGATTGTGGCAAGGGTAAAGGGATTGCTTTCAATGAAACTCACCTGGTTGGGTGTAGCTCAAGATGTGACGTGAATGCAACATCCAGTAGTGACAACCAAAAAAGAATTGATGAAATGTTAGCTGCTTGTATTGATATGGAGGAAAATGCAAAGCTAGTAAAAAATGCATCGGATTCTCTTGGGGGTTCTACCAATAAGGAAAATGATGGTAACTATGATGAAGATGAAGATGAAGAGATGATACTGCCAGCTATGCACAATGAAGTTGATCCAGCTGTTCTGGCCTCTCTGCCTCCATCAATGCAACTGGATCTCCTTGTTCAGATGAGAGAGCGATTGATGGCAGAGAACAGACAAAAGTATCAGAAAGTCAAGAAGGATCCTTCAAAGTTCTCTGAGCTTCAAATACAATCTTACCTTAAAACTGTAGCTTTCCGCCGCGAGATAAATGAAGTTCAGAAAGCTGCTGTTGGAGGAGGAGTAGGCGGGATACAGACTTCACGGATTGCATCTGAAGCGAACCGAGAGTATATATTCTCATCATCCTTTTCCGGTGACAAACAAGGACTTACCTCTTCCAGATTAGAGAGAAATGTTGAAGATACACAGCAAATGGAGCGGGGAACACATCCTCCACAGAATTTTGTAAATAACATAGCAGCAGGAAATGTTTCTAATATTTCAGCTGGATTGGTTTGCGGTGAACCTAGCGAGCCTGCTGATGAAAGTATTGAGACATATCTAGATGAGAGGGGTCGAGTCCGAGTTAGTAGATCAAGAGCTATGGGGATGCGCATGACCCGTGATATACAAAGGAATTTGGATTTGATGAAGGAGATTGAGCATGACAGAAGACATACAGACAAGGTTGATAACATTGACACAGTGCCAAATACAGAAAATAGTCCATCAAAATGTTCTGGGAATCAGCCTAGTGGTAAAACAGGAGAAGTGAATTTTGACTTAGTTGGAGATAATGTGCAGAATGAGGAATTAATGCTTGGTAAGAATACTTCTATAGAGATATCCTTTGAGTATGATTGCAAGGATGAATTTGCAAGTGGCGGGGATGATATATTTGCAAGTTTAGTTGGAGGAATATCTATGGAACACTCTCATGCTGATGATACTGTGGTGAAAACACCTTGTGGTTCTGATTCAGATTGTGATTGGGAAGAAGGAATTGTTCAAGGCAACAATACTATTTCTCCTGGATATAATAAAGTGGAATTGAAGTCTTCTGTTACAGGTGATTATAATAATAATGAAAGTGAAGAAGATTGGGAAGAAGGGGATTGTAATGGTACTAAAAGTACCTTATTTTGTCCATCTGAGCCGGGAAAGTTGGCATCAAAAGGACAGTTGGAAGAGGAGTCTGATTTGCAGGAAGCAATTAGGAGAAGTCTCGAGAGTACACGGGATGGAAAACTTAAATGCGTGTCATCTTTAGATGAACATTCAAGTGCTTATGAGAAGAAATTGGATCCTAATTTAGGACATGGTGATAACAACGAAGCTGTAGGAGACAAAACTGAAAACTACATGACTAGAAATGACCCCGAAACTTTCCATCAGTTAAACTCATCTGTGACATTTAAATCCAAAAACTCAGATACATTGATTAATGAACCTAGCAAACTGGATGGACACAATAATTCTGAAAATTCAATTTCGGATGGAAATGTCATGATGATGGATGAGGTTCCAAATCTTGGTGTTGCAGAGGAATTTTTGGATAATCATAAAGATGGTAACGTGTCTTTCTGTTGTAACAATTTGTCCAAGGTTGATCCACTGGGTGTGACTGAAGAGGAGAAAAAGAAAAATAATAATGACTCTCAAGCATTGAGTAATTCTTCTGACAATAATACAAAGGCTGCTATTCTTCCGTCGGAGCCATCCTTGAAAGGAGCTAAAGACCTTGATCTGGAGTTAAAATTGCCTTCAGTGAACAATGATGGAAATTTGTCTATGGAAAGAACTAGTAACCTTTCCCAAGAATCAATGATTACCCCAGGAGATTTTCCTGTACAATTGGACGAGGTTCGATTGAATGAAGAAATGGAAATTCTTGATAGGGAATATATGAACCTAGAAAAGGAGCAGAGGAAGTTTGAGCGTAATGCAGAGTCCGTTGACAGTGAATTATTCACTGAATGCCAGGAACTACTGCAAATGTTTGGCTTGCCATATATCATTGCCCCTATGGAAGCTGAGGCGCAATGTGCTTACCTAGAGCTATCAAAATTGGTTGATGGTGTTGTGACTGACGACTCTGATGTCCTTTTATTTGGGGCCCGCAGTGTTTACAAGAATATATTTGATGACCGCAAATACGTAGAGACATACTTCATGGAGGACATTGAAAAGGAGCTTGGATTGACCAGAGAAAAATTAATTCGCATGGCACTACTTCTTGGGAGTGATTATACTGAAGGTGTAAGTGGGATTGGCATTGTTAATGCTATTGAGGTAGTAACTGCATTCCCGGAGGAAGACGGGTTCCAGAAATTCCGGCAGTGGGTTGAGTCACCAGATCCCACCATCCTTGGAAGGTTGGATGCAAAATCTGCATCTAAGAAAGGGTCAAAACTTGAAGAAAAGGAGTCACCTGATCACATTCAAGAAACAAAGCAAATTTTCATGGATAAGCATAGAAATGTTAGCAAGAATTGGCATATTCCTTCTTCTTTTCCAAGTGAAACAGTTATATCTGCTTACATATCTCCAGAAGTTGACAAGTCAACTGAGCCTTTCGCATGGGGAAAGCCAGATCAGCTTGTTCTTCGCAAAATGTGCTGGGAGAAATTTGGGTGGTCTAGCCAGAAAGCAGATGAATTGCTGTTACCTGTTTTAAAGCAGTACAACAAACATGCGACTCAACTGCGGTTGGAGGCATTTTACAGTTTCAACGAAAAATTTGCAAAAATTCGTAGCAAGAGAATCAATAAAGCTTTAAAGGGAATAACTGGTAAGCCACCTTCTGATGGAACAGAGGAAGAGGAAGGTCTTGCAAGTGTGAAGAAATCAAAAAGAAAAGAGACGATGGAAAGAAAAAATGACAGGGATATTGTTGCTAAGCAACATACAAAGAAAAAGAAAATCAATGATGTTTCTACTTCTACACCTGGTGCATCCATGGTTGAAAAGTTACAGCCATGTATGCAAACAGAAGAACAGCAACACGATGGTAAGGAATTGGCTCGGAATAAAAGTGACAGTAGGCGAGGAAGAGGTAAAGGCGTGGGAGTAAAAAGAAGCAGAGAGAAGAAAGGTCGTTATTTTCAATCTGAAGCTGAAACGTCATCTAGTAGTAGTGATAATGAGAATCATGAGATGGGAGTACAAATTAATGGGTCAACAGTTACAGAAGCTGTGCGAAGGTCAAAGCGATCTCGGAAACCTGTCAACTATTCCTTCCAGGACCTTGAAGTTGAAGATGCAGTTGATTCATTTGATGAGAACAATCAGACCTGCTTGCGCGGAGAAAGACTACAAGAAAAATCATCTTGCATTGCTGATGCATGGGTAGATAGTTTCAGCAGAGGGATTGAAAGCAATATGATAGAAATTCCTATGAAGGATAACTTACCTGCAAACTATCTGGAGCCAGAAACAGATGATGGTGCAGCAACAACAAGTATTCGCCCTTCAGATGACTATCTTGAAATAGGAGGTGGGTTCTGTGCAGACGATAGTGAGATGGATAACAACCATGATGCAATTGATGACATGAACACGGCTACAACAGTCTCTCCACGATGTTCTGAATTTTTGGGTGAATTGGACCATGATAAAAGTAGTTCAGATATATTGTTTTCTGGTACTGAAAAGGTTACAAGCAAGATACAAGACGGAGAGACATGTCACAAGTTAGACACAGTGCCAAACGACCACCTAAATGCTGGCACAAGGGTCTTGACAACAGAGAATGCTCATCAAAATAGTGAGAGCTCTGAGGTAGCTTTTAGCGCTATGCCTTTTTTGAGGAAAAAAAGAAAGAGGTGA 4833 0.412 MGVHGLWELLSPVGRRVSVETLAGKTLAIDASIWMVQFIKAMRDEKGEMVRNAHLLGFFRRICKLLFLRTKPVFVFDGGTPALKRRTVIARRRQRDVSQAKVRKTAEKLLLNHLKAMRLKELADDIKNQKLTQKSVTKSQKKSNQMDFVGNDLGKSHTKELDEMPAATSLAKGDRNLSQTKITTRCNQEELDEMLAASIAAEENEIRSREGGTSTVINSSDADEETILPTANGEVDLAVLAALPQSMQLDILAQLKGKKTGLLKQVDNQIRHEVSDCGKGKGIAFNETHLVGCSSRCDVNATSSSDNQKRIDEMLAACIDMEENAKLVKNASDSLGGSTNKENDGNYDEDEDEEMILPAMHNEVDPAVLASLPPSMQLDLLVQMRERLMAENRQKYQKVKKDPSKFSELQIQSYLKTVAFRREINEVQKAAVGGGVGGIQTSRIASEANREYIFSSSFSGDKQGLTSSRLERNVEDTQQMERGTHPPQNFVNNIAAGNVSNISAGLVCGEPSEPADESIETYLDERGRVRVSRSRAMGMRMTRDIQRNLDLMKEIEHDRRHTDKVDNIDTVPNTENSPSKCSGNQPSGKTGEVNFDLVGDNVQNEELMLGKNTSIEISFEYDCKDEFASGGDDIFASLVGGISMEHSHADDTVVKTPCGSDSDCDWEEGIVQGNNTISPGYNKVELKSSVTGDYNNNESEEDWEEGDCNGTKSTLFCPSEPGKLASKGQLEEESDLQEAIRRSLESTRDGKLKCVSSLDEHSSAYEKKLDPNLGHGDNNEAVGDKTENYMTRNDPETFHQLNSSVTFKSKNSDTLINEPSKLDGHNNSENSISDGNVMMMDEVPNLGVAEEFLDNHKDGNVSFCCNNLSKVDPLGVTEEEKKKNNNDSQALSNSSDNNTKAAILPSEPSLKGAKDLDLELKLPSVNNDGNLSMERTSNLSQESMITPGDFPVQLDEVRLNEEMEILDREYMNLEKEQRKFERNAESVDSELFTECQELLQMFGLPYIIAPMEAEAQCAYLELSKLVDGVVTDDSDVLLFGARSVYKNIFDDRKYVETYFMEDIEKELGLTREKLIRMALLLGSDYTEGVSGIGIVNAIEVVTAFPEEDGFQKFRQWVESPDPTILGRLDAKSASKKGSKLEEKESPDHIQETKQIFMDKHRNVSKNWHIPSSFPSETVISAYISPEVDKSTEPFAWGKPDQLVLRKMCWEKFGWSSQKADELLLPVLKQYNKHATQLRLEAFYSFNEKFAKIRSKRINKALKGITGKPPSDGTEEEEGLASVKKSKRKETMERKNDRDIVAKQHTKKKKINDVSTSTPGASMVEKLQPCMQTEEQQHDGKELARNKSDSRRGRGKGVGVKRSREKKGRYFQSEAETSSSSSDNENHEMGVQINGSTVTEAVRRSKRSRKPVNYSFQDLEVEDAVDSFDENNQTCLRGERLQEKSSCIADAWVDSFSRGIESNMIEIPMKDNLPANYLEPETDDGAATTSIRPSDDYLEIGGGFCADDSEMDNNHDAIDDMNTATTVSPRCSEFLGELDHDKSSSDILFSGTEKVTSKIQDGETCHKLDTVPNDHLNAGTRVLTTENAHQNSESSEVAFSAMPFLRKKRKR 1610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00651 1610 MobiDBLite consensus disorder prediction 1312 1333 - -
Vifa5g00651 1610 MobiDBLite consensus disorder prediction 879 908 - -
Vifa5g00651 1610 CDD PIN_XPG_RAD2 975 1228 - -
Vifa5g00651 1610 Pfam XPG I-region 1003 1084 IPR006086 GO:0004518
Vifa5g00651 1610 MobiDBLite consensus disorder prediction 1269 1311 - -
Vifa5g00651 1610 MobiDBLite consensus disorder prediction 750 781 - -
Vifa5g00651 1610 SUPERFAMILY PIN domain-like 2 1084 IPR029060 -
Vifa5g00651 1610 CDD H3TH_XPG 1072 1189 - -
Vifa5g00651 1610 SMART xpgineu 1000 1069 IPR006086 GO:0004518
Vifa5g00651 1610 FunFam DNA repair protein UVH3 1069 1126 - -
Vifa5g00651 1610 MobiDBLite consensus disorder prediction 1334 1355 - -
Vifa5g00651 1610 MobiDBLite consensus disorder prediction 569 588 - -
Vifa5g00651 1610 Coils Coil 956 990 - -
Vifa5g00651 1610 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 1 256 - -
Vifa5g00651 1610 SMART xpgn3 1 98 IPR006085 GO:0004518
Vifa5g00651 1610 MobiDBLite consensus disorder prediction 887 904 - -
Vifa5g00651 1610 MobiDBLite consensus disorder prediction 750 774 - -
Vifa5g00651 1610 Gene3D - 1069 1158 - -
Vifa5g00651 1610 CDD PIN_XPG_RAD2 2 111 - -
Vifa5g00651 1610 Gene3D - 951 1068 - -
Vifa5g00651 1610 SMART HhH_4 1071 1104 IPR008918 GO:0003677|GO:0003824
Vifa5g00651 1610 Pfam Ubiquitin binding region 230 254 IPR025527 -
Vifa5g00651 1610 Pfam Ubiquitin binding region 362 389 IPR025527 -
Vifa5g00651 1610 ProSitePatterns XPG protein signature 2. 1003 1017 IPR019974 GO:0016788
Vifa5g00651 1610 MobiDBLite consensus disorder prediction 1262 1408 - -
Vifa5g00651 1610 MobiDBLite consensus disorder prediction 132 151 - -
Vifa5g00651 1610 ProSitePatterns XPG protein signature 1. 70 84 IPR019974 GO:0016788
Vifa5g00651 1610 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 1069 1252 IPR036279 -
Vifa5g00651 1610 MobiDBLite consensus disorder prediction 330 349 - -
Vifa5g00651 1610 Pfam XPG N-terminal domain 1 95 IPR006085 GO:0004518
Vifa5g00651 1610 MobiDBLite consensus disorder prediction 566 588 - -
Vifa5g00651 1610 PRINTS Xeroderma pigmentosum group G protein signature 54 77 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Vifa5g00651 1610 PRINTS Xeroderma pigmentosum group G protein signature 96 118 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Vifa5g00651 1610 PRINTS Xeroderma pigmentosum group G protein signature 2 19 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Vifa5g00651 1610 Gene3D - 1 151 - -
Vifa5g00651 1610 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 72 91 IPR006084 -
Vifa5g00651 1610 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Vifa5g00651 1610 MobiDBLite consensus disorder prediction 1372 1400 - -
Vifa5g00651 1610 FunFam DNA repair protein UVH3 949 1068 - -
Vifa5g00651 1610 MobiDBLite consensus disorder prediction 132 156 - -
Vifa5g00651 1610 FunFam DNA repair protein UVH3 1 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00651 Vifa-Chr5 168391383 168402164 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00651 1 95 Core DNA Replication Machinery Family AT5G26680 35.238 6.19e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00651 K10846 - gmx:100820295 1891.7