Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00650 ATGTCTTCTCTCCAATTCAACCTCCATCCTCTTCCTCAATCTCCACTACTCACCACCACCACCATTTCTTCCTTCTCAATCTTCTACAACAGTCACCACCTTCTCCGCTTCAATCTCAAAACCCTAAAAAACCACAGGATCTTCGCAATGTCTAGTAACTCCACATTCAAAATGAACCTCAATGAGTATCTCGTCACTCTTGACAAGCCTTTAGGTATCCGATTCGGTCTAACCTCCGATGGAAAAATCATCGTTCACTCTCTCGCTAAAGGGGGTAATGCCGAGAAGTCCAGGATAATTATGGTGGGTGATACTTTGAAGAAAGCTGGTGATTCGTCTCAGAATAGTCTTGTTCAGATTAAAGACGTTGGAGATACACAGAAAGTGCTAAATGAGCAAACAAGTTCTTTTAGCTTGGTTCTTGAGAGGCCAGCATCTACATTTCCCATTCAACTACTGCATAATAAGACGAATGATCTTGAAATAGTGTATAATAGAGGTCGAGTTCCTGTTCTCACATGGAACAAGACACTATTAGCATCAAATTTACAACCATCTAGTGAGAGCTGTGGGAGTTCTGGATTTTCGATGTTCAACTCAAAGTTTCTTAATTCAAATGGAAACAAGTTATTGAGCAATCAAAATCAACATGCCATCACCCACGGTGAAAGAAATTCATTTACTGAACAAACAATACAACTTGCTTGTGTTTTCACTGAAGAAGCATGCGGAGATGGAGATTGGGCTCATGGAAGTTTTCCACTTGAGGAATATATTAAGGCTCTAGATCGTTCAAAGGATGAGATGTACTATAATCACTCTCTTGGTATGCGATATAGTAAGATTACTGAGCAAATATATGTGGGATCCTGCATACAAACAGAGGATGATGTGGAAACCTTGTCAAAAGTTGAGGGAGTTACGGCTGTTCTGAACTTCCAAAGTGGAACTGAAGCTGAAAATTGGGGAATCAATGTAAAATCAGTCAATGACTCTTGTCAAAGGAATAATATTCTCATTATCAACTATCCTATACGGGACGGGGATTCTTATGATATGAGAAAAAAACTCCCATTTTGTGTTGGGCTTTTATTACGGTTGCTAAGAAAGAATCTTCGTGTTTTTGTTACTTGCACTTCTGGATTTGATCGGTCTCCTGCTTGTGTGATTGCATACCTACATTGGATGACAGACGTTTCCCTTCATGCAGCCTATACTTGGGTCACTGGGATGCACACCTGCAGGCCTGACAGGCCGGCAATTGCATGGGCAACATGGGATCTTATAGCTATGGTTGAAAGGGGCGAACATGATGGTCCTCCCACACATGCTGTCACATTTGTGTGGAATGGTCATGAGGGAGAGGATGTAAATTTGGTTGGAGACTTTACTGCAAATTGGAAAGAACCCCTTAAGGCAAAGCATCGGGGTGGATCAAGACATGAAGTAGAAGTTAAACTTCCACAAGGAAAGTATTACTACAAGTTTATTCACCAGCAAAAAGATGCCAACGTTGTAAAGGTGATGGAAAGGCCATTGAATGAAAAAGAGCGGTTTATGTTGGCAAAAGCTGCTCGTTGTATTGCTTTCTCTATCTGCCCTCTCAGATTAGCTCCCAAATAG 1623 0.4116 MSSLQFNLHPLPQSPLLTTTTISSFSIFYNSHHLLRFNLKTLKNHRIFAMSSNSTFKMNLNEYLVTLDKPLGIRFGLTSDGKIIVHSLAKGGNAEKSRIIMVGDTLKKAGDSSQNSLVQIKDVGDTQKVLNEQTSSFSLVLERPASTFPIQLLHNKTNDLEIVYNRGRVPVLTWNKTLLASNLQPSSESCGSSGFSMFNSKFLNSNGNKLLSNQNQHAITHGERNSFTEQTIQLACVFTEEACGDGDWAHGSFPLEEYIKALDRSKDEMYYNHSLGMRYSKITEQIYVGSCIQTEDDVETLSKVEGVTAVLNFQSGTEAENWGINVKSVNDSCQRNNILIINYPIRDGDSYDMRKKLPFCVGLLLRLLRKNLRVFVTCTSGFDRSPACVIAYLHWMTDVSLHAAYTWVTGMHTCRPDRPAIAWATWDLIAMVERGEHDGPPTHAVTFVWNGHEGEDVNLVGDFTANWKEPLKAKHRGGSRHEVEVKLPQGKYYYKFIHQQKDANVVKVMERPLNEKERFMLAKAARCIAFSICPLRLAPK 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00650 540 Gene3D Immunoglobulins 440 518 IPR013783 -
Vifa5g00650 540 FunFam Phosphoglucan phosphatase LSF1 chloroplastic 271 438 - -
Vifa5g00650 540 Pfam Glycogen recognition site of AMP-activated protein kinase 445 497 IPR032640 -
Vifa5g00650 540 ProSiteProfiles Dual specificity protein phosphatase domain profile. 278 437 IPR020422 GO:0006470|GO:0008138
Vifa5g00650 540 SUPERFAMILY PDZ domain-like 62 152 IPR036034 GO:0005515
Vifa5g00650 540 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 268 411 IPR029021 -
Vifa5g00650 540 SUPERFAMILY E set domains 442 499 IPR014756 -
Vifa5g00650 540 Gene3D Protein tyrosine phosphatase superfamily 268 439 IPR029021 -
Vifa5g00650 540 Pfam Dual specificity phosphatase, catalytic domain 299 408 IPR000340 GO:0008138|GO:0016311
Vifa5g00650 540 ProSiteProfiles PDZ domain profile. 64 145 IPR001478 GO:0005515
Vifa5g00650 540 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 18 537 - -
Vifa5g00650 540 CDD E_set_AMPKbeta_like_N 445 497 - -
Vifa5g00650 540 CDD DSP_laforin-like 277 423 IPR045204 GO:0019203
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00650 Vifa-Chr5 166233217 166256382 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00650 129 540 Protein tyrosine phosphatase (PTP) family AT3G01510 61.778 0.0 565
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00650 - - mtr:25498007 966.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00650 5 166233217 166256382 Vifa5g00650 5 166233217 166256382 ECH