Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00649 ATGCCTCCAAAGAAGAAGCAGCAGCGAGAAGAAAAACCGGAAAACCCTAAAACCCTTCCAAAGAAGAAGACTAACAACACTTCATCAGTGTCTTCTTCTACTCCATTTACTAAGAAACCTATTCCACAACCTTCCAAATACGGTATTCAACACTTCTTCGATCGCCACACAATCCAACACTCTCAGAAACCGGTTGATTCCGTTTTTCACCCACCGCCGGAGAAACCTAACGACGTGAAGGCTCCGGCGGATCCATCTTCACAGGATGTTACTCCTGATAATCTGCTCTTGCCGGTGGCCACTGATCCTGTCGAGGTGTCTCCGGAGATTTCGAAGTCCATGTCACGCAAGCGGTTCAAATTCTCACCGGGGATGTTTATCAAGCAAAGTCAGGATGATGGGGCTGATGAGGTTACATGGAAGATATCTCCAGTGAATGAAAGGCTTCAAGCAGTTTCAAAATACACGCCTAAGATGATTCAAGCATTGGCTGATTCTTCGAGGACGAGCATGTTGCAAATTCGCCGCTGCTCAGAAGATAAGACTTCTCTCGGCAAAGGCGATAAGGTTGAAGAGTTGCTAATTACACCAACTCCTACTGCATCTGCAAAAGCTCCGTTGTCATTGAGTAAATTAGGCCTGAAAAAATTAAACCGTGACCGTAATGTGGGAGTTAATGGAAATCCAACTACTGTGAGCAACTCTTCTGGAGTGGCTGGTGAAAGAAATCCCTTCAGAACTCCACCATCTATGTCTTGTCGCCTAGATAAGCTTGCCAAGGATGTGGAGCACATTGGACCATCTGACCAACCTTTTTTGAGACAGCACAAAAAGGCATTGCTTGAACTTTTAGATCAAGTTGAAGATGCAATTGGTGTTGATAGTGATACAGTTTGTGATAAAACCACTCATTCCTTTAAATCACAAGATGGCATTGCTAACGAGCTCCCTGTCAGAGTCAACCATCTAGTTGAAAGGACTGAATCACATATACCTAAAGAGGTTGTTGGTGATTTCTCCAACTCTAATTATTTGGTTTTGGAGGCATCTGAAAATTTGCAACCTGCTGGTTCATCTGCTGCTGAAGGTCCATGCAAGGTGCTTCGTTTACTAAATGAACAAACTGGAGAAGAGCGAGCTGTAAACTTGTGGGATGAATGGTCCTACAGTGTAATTGCACCTGGAGATACTGTGAACGTAATTGGTCAATTTGATGAAGGTGGATACTGTGATATTAATCATGCTAACAATTTTTTGATTGTACACCCAGATATTCTTATGTCTGGAACACGGGTTGCTGCCAGTTTTAGTTGCCCAAGGAGAACTGTCTTAGACGAGAGGCTAAAAAACAATGAGTACTCAACTGCAGCTTTATATGGAACCTTGCTTCACCAAATATTTCAGGCTGGGCTTACAAATGACAATCCTACAATAAACTTCTTGGAATGTTACATAGAAGTTGTTTTAAGAAGAAATGTTGAAAGTTTATTTGCATGTGGAGTTAATGAAAAGGATGTTCGCAAAATCATGATTGATGGTATCCCTAAACTATACAATTGGATCATGCTGTTCAGAACTATTGAGGAAAGAGAAGATCCTAATGTTAATTTTGGATGTGCTAATGGAATGAAGAACATTGGCATATCTGAGGTAATTGATATTGAAGAAATGGTATGGGCACCAAAATATGGTTTGAAAGGGATGATTGATGCTTCACTTAGAGTGAAGGTTCAATCTAGAAAAGATAAACCAGAGGAGAAGATCATGCCATTAGAGTTTAAAACTGGAAAAGCACCCAGTAGCCAGACATCCATAGAACATAATGCCCAAGTAATTTTGTACACTCTACTGATGTCTGAAAGGTACCAGAAGACCATTGATTCTGGTCTTCTGTATTATCTCCAAACAGATCAGACACAGGGTATTACAGTTCAAAGATCCGACTTAGTTGGGTTAATAATACGGCGTAATGAGCTAGCAAGTGAAATTCTCAAGGCATTAGTCTTGCAGCAACTTCCACCAGTGTTACAGAGTCCTAGCATGTGCAGAGGTTGTCGCCATCTTAATGCCTGTAGCATTTATCATAAGGCGCATGGTGGAAGCATCGAGAGCAAAGAATTGGGAGATGTTTTCGATTCCAATACTAATCACTTGACTTCATCTCATTTGAAGTTCCTCTGCCATTGGGACCATTTGATTGACTTAGAAGCTAAAGGGACTGAGTTTTTAAAGAAAGATATGTGGCGATCATATAATTTGAGGACTCGCAGTGCCGGTGGTGTTTCTTCTATTGTTATTGATGCTTCACAAGGAATACCTTATTCAAAATCTCACAAAGATAATCATTTTGTTTATCGTTTTGTACCGCAAGATACTTCTTGCCCCTCTATAGTTTCTGATGATGATCCTTCTAGTGTCTCATTGAAAATTGATTTAGATTTCACACTGAGAAGTGGTGACTTTGTGATATTGAGTAACGAGTCAAGCCATCAAACTATTGCAAGAGGAGTGATTTCAGATACTAGCAAGAATCATATATCTGTTTCCTTTTCCAAGCTTTTGAGAATTCCCGGGAGGTCTTCCACAGAACATGATCTCCTTAAGCAGGTTTGGAGAATTGACAAAGATGAAGCTGTGACCTTGTTTGCTATTATGAGGTTTAATCTAGTACAACTTTTTCTACAAAATGATCAAAGTGCTCATCTTCGGAGGATGATTGTTGACCTTGAGGCTCCTAGATTTGACAGTGGTTCTATAGTTAGCCAGGATCCTGCAATATCTTACGTTTGGTCTGAGCAGAGTTTGAATGATGATCAACGTAGAGCTATTCTCAAGATACTTGTGGCAAAAGATTATGCACTTATCTTAGGGATGCCTGGAACAGGGAAGACATCCACCATGGTCCATGCTGTGAAAGCCTTGTTGATTAGAGGCACATCCATTTTACTGACAGCCTATACAAATTCTGCTGTTGATAATTTACTAATCAAATTAAAAGCTCAGGGCATTGATTTTGTTCGGATTGGAAGACATGAAGCAGTGAATGAAGAGGTCAGAGAGCACTGCCTCTCAGAAACAAATGTACAGAGTGTTGAAGATATCAAAATAAGGTTAGAACAAGTCAAAGTTGTTGCAGTTACATGTTTGGGCATTTCCAGTCCCCTGCTTGCCAACAAGAGATTTGATGTATGCATTATGGATGAAGCCGGACAGACAACTCTGCCGGTGTCCTTGGGCCCTCTAAGATTTGCTTCAATGTTTGTTCTTGTTGGGGATCATTATCAACTGCCACCACTTGTCCAAAGTACAGAGGCCCTAGAGAATGGCATGGGGATGAGTTTGTTTTGCAGGCTTTCAGAAGCTCATCCACAGGCAATTTCAGCTTTGCAGAGTCAGGGTATCATGGACTTGTCAAATGTCTTGATATATGGTGACAGATTGAGGTGTGGTTCATCTGAGATAGCTAATGCCAAACTTGAGTTTTCTGGCTTAAGCTGCTGTTTGCCTTGGCTGGAAGATGTTTTGAATCCTGGAAGGCCAGTGATATTTATTGATACTGATATGTTGCCTGCCTTAGAGGAAAGAGATCAGAAAGTTGTAAATAACCCTACTGAAGCTCACATAATTGCCGAGGTTGCAAAGGAATTGGTTAACAATGGAATTGGAGGAGAGCACATTGGCATTATTACACCCTATAACTCACAGGCAAACCTCATCCGACTTGCTACTTGCATAACATCCTTGGAGATACATACCATTGACAAATACCAGGGTAGAGATAAAGACTGTATATTAGTATCTTTTGTACGGTCTTGTAAGAACCCAACAAGCTGCGTGGCTTCTCTACTCGGAGACTGGCACAGGATAAATGTGGCCCTTACTCGTGCTAAGAGAAAGTTGATCATGGTGGGGTCTCGCAAAACTCTAATGAAGGTTCCACTACTGAAGCTTCTCATTAAGAAAGTTGAAGAGCAATCTGGAATTTTGACCTTGTCTAAGAACGATATCTATAGAAAAGGGGAGCTAATTAGATGTTCTCAAATTGCTTGTTCAAAATCAAAACAAACATTAGATGTTCACAATTGA 4086 0.4092 MPPKKKQQREEKPENPKTLPKKKTNNTSSVSSSTPFTKKPIPQPSKYGIQHFFDRHTIQHSQKPVDSVFHPPPEKPNDVKAPADPSSQDVTPDNLLLPVATDPVEVSPEISKSMSRKRFKFSPGMFIKQSQDDGADEVTWKISPVNERLQAVSKYTPKMIQALADSSRTSMLQIRRCSEDKTSLGKGDKVEELLITPTPTASAKAPLSLSKLGLKKLNRDRNVGVNGNPTTVSNSSGVAGERNPFRTPPSMSCRLDKLAKDVEHIGPSDQPFLRQHKKALLELLDQVEDAIGVDSDTVCDKTTHSFKSQDGIANELPVRVNHLVERTESHIPKEVVGDFSNSNYLVLEASENLQPAGSSAAEGPCKVLRLLNEQTGEERAVNLWDEWSYSVIAPGDTVNVIGQFDEGGYCDINHANNFLIVHPDILMSGTRVAASFSCPRRTVLDERLKNNEYSTAALYGTLLHQIFQAGLTNDNPTINFLECYIEVVLRRNVESLFACGVNEKDVRKIMIDGIPKLYNWIMLFRTIEEREDPNVNFGCANGMKNIGISEVIDIEEMVWAPKYGLKGMIDASLRVKVQSRKDKPEEKIMPLEFKTGKAPSSQTSIEHNAQVILYTLLMSERYQKTIDSGLLYYLQTDQTQGITVQRSDLVGLIIRRNELASEILKALVLQQLPPVLQSPSMCRGCRHLNACSIYHKAHGGSIESKELGDVFDSNTNHLTSSHLKFLCHWDHLIDLEAKGTEFLKKDMWRSYNLRTRSAGGVSSIVIDASQGIPYSKSHKDNHFVYRFVPQDTSCPSIVSDDDPSSVSLKIDLDFTLRSGDFVILSNESSHQTIARGVISDTSKNHISVSFSKLLRIPGRSSTEHDLLKQVWRIDKDEAVTLFAIMRFNLVQLFLQNDQSAHLRRMIVDLEAPRFDSGSIVSQDPAISYVWSEQSLNDDQRRAILKILVAKDYALILGMPGTGKTSTMVHAVKALLIRGTSILLTAYTNSAVDNLLIKLKAQGIDFVRIGRHEAVNEEVREHCLSETNVQSVEDIKIRLEQVKVVAVTCLGISSPLLANKRFDVCIMDEAGQTTLPVSLGPLRFASMFVLVGDHYQLPPLVQSTEALENGMGMSLFCRLSEAHPQAISALQSQGIMDLSNVLIYGDRLRCGSSEIANAKLEFSGLSCCLPWLEDVLNPGRPVIFIDTDMLPALEERDQKVVNNPTEAHIIAEVAKELVNNGIGGEHIGIITPYNSQANLIRLATCITSLEIHTIDKYQGRDKDCILVSFVRSCKNPTSCVASLLGDWHRINVALTRAKRKLIMVGSRKTLMKVPLLKLLIKKVEEQSGILTLSKNDIYRKGELIRCSQIACSKSKQTLDVHN 1361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00649 1361 FunFam DNA replication ATP-dependent helicase/nuclease DNA2 1031 1130 - -
Vifa5g00649 1361 Pfam DNA replication factor Dna2 373 574 IPR014808 -
Vifa5g00649 1361 MobiDBLite consensus disorder prediction 220 250 - -
Vifa5g00649 1361 FunFam DNA replication helicase Dna2 536 692 - -
Vifa5g00649 1361 MobiDBLite consensus disorder prediction 20 40 - -
Vifa5g00649 1361 CDD DNA2_N-like 428 661 - -
Vifa5g00649 1361 Pfam Domain of unknown function DUF83 584 692 IPR022765 -
Vifa5g00649 1361 CDD DEXXQc_DNA2 934 1132 IPR026851 GO:0017116
Vifa5g00649 1361 MobiDBLite consensus disorder prediction 1 19 - -
Vifa5g00649 1361 MobiDBLite consensus disorder prediction 223 241 - -
Vifa5g00649 1361 Pfam AAA domain 1037 1102 IPR041677 GO:0004386
Vifa5g00649 1361 Pfam AAA domain 935 1026 IPR041677 GO:0004386
Vifa5g00649 1361 Gene3D - 865 1033 IPR027417 -
Vifa5g00649 1361 Gene3D - 1034 1131 IPR027417 -
Vifa5g00649 1361 FunFam DNA replication helicase 1131 1341 - -
Vifa5g00649 1361 Gene3D - 428 692 IPR011604 -
Vifa5g00649 1361 FunFam DNA replication ATP-dependent helicase/nuclease DNA2 877 1026 - -
Vifa5g00649 1361 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 934 1315 IPR027417 -
Vifa5g00649 1361 PANTHER DNA2/NAM7 HELICASE FAMILY 199 1324 IPR045055 -
Vifa5g00649 1361 Pfam AAA domain 1111 1306 IPR041679 -
Vifa5g00649 1361 Gene3D - 1132 1335 IPR027417 -
Vifa5g00649 1361 MobiDBLite consensus disorder prediction 1 94 - -
Vifa5g00649 1361 CDD SF1_C_Upf1 1134 1323 IPR047187 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00649 Vifa-Chr5 165811291 165831611 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00649 1 1076 Core DNA Replication Machinery Family AT1G08840 53.650 0.0 1073
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00649 K10742 - gmx:100799415 1758.81