Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00648 ATGCCTCCAAAGAAGAAGCAGCAGCGAGAAGAAAAACCGGAAAACCCTAAAACCCTTCCAAAGAAGAAGACTAACAACACTTCATCAGTGTCTTCTTCTACTCCATTTACTAAGAAACCTATTCCACAACCTTCCAAATACGGTATTCAACACTTCTTCGATCGCCACACAATCCAACACTCTCAGAAACCGGTTGATTCCGTTTTTCACCCACCGCCGGAGAAACCTAACGACGTGAAGGCTCCGGCGGATCCATCTTCACAGGATGTTACTCCTGATAATCTGCTCTTGCCGGTGGCCACTGATCCTGTCGAGGTGTCTCCGGAGATTTCGAAGTCCATGTCACGCAAGCGGTTCAAATTCTCACCGGGGATGTTTATCAAGCAAAGTCAGGATGATGGGGCTGATGAGGTTACATGGAAGATATCTCCAGTGAATGAAAGGCTTCAAGCAGTTTCAAAATACACGCCTAAGATGATTCAAGCATTGGCTGATTCTTCGAGGACGAGCATGTTGCAAATTCGCCGCTGCTCAGAAGATAAGACTTCTCTCGGCAAAGGCGATAAGGTTGAAGAGTTGCTAATTACACCAACTCCTACTGCATCTGCAAAAGCTCCGTTGTCATTGAGTAAATTAGGCCTGAAAAAATTAAACCGTGACCGTAATGTGGGAGTTAATGGAAATCCAACTACTGTGAGCAACTCTTCTGGAGTGGCTGGTGAAAGAAATCCCTTCAGAACTCCACCATCTATGTCTTGTCGCCTAGATAAGCTTGCCAAGGATGTGGAGCACATTGGACCATCTGACCAACCTTTTTTGAGACAGCACAAAAAGGCATTGCTTGAACTTTTAGATCAAGTTGAAGATGCAATTGGTGTTGATAGTGATACAGTTTGTGATAAAACCACTCATTCCTTTAAATCACAAGATGGCATTGCTAACGAGCTCCCTGTCAGAGTCAACCATCTAGTTGAAAGGACTGAATCACATATACCTAAAGAGGTTGTTGGTGATTTCTCCAACTCTAATTATTTGGTTTTGGAGGCATCTGAAAATTTGCAACCTGCTGGTTCATCTGCTGCTGAAGGTCCATGCAAGGTGCTTCGTTTACTAAATGAACAAACTGGAGAAGAGCGAGCTGTAAACTTGTGGGATGAATGGTCCTACAGTGTAATTGCACCTGGAGATACTGTGAACGTAATTGGTCAATTTGATGAAGGTGGATACTGTGATATTAATCATGCTAACAATTTTTTGATTGTACACCCAGATATTCTTATGTCTGGAACACGGGTTGCTGCCAGTTTTAGTTGCCCAAGGAGAACTGTCTTAGACGAGAGGCTAAAAAACAATGAGTACTCAACTGCAGCTTTATATGGAACCTTGCTTCACCAAATATTTCAGGCTGGGCTTACAAATGACAATCCTACAATAAACTTCTTGGAATGTTACATAGAAGTTGTTTTAAGAAGAAATGTTGAAAGTTTATTTGCATGTGGAGTTAATGAAAAGGATGTTCGCAAAATCATGATTGATGGTATCCCTAAACTATACAATTGGATCATGCTGTTCAGAACTATTGAGGAAAGAGAAGATCCTAATGTTAATTTTGGATGTGCTAATGGAATGAAGAACATTGGCATATCTGAGGTAATTGATATTGAAGAAATGGTATGGGCACCAAAATATGGTTTGAAAGGGATGATTGATGCTTCACTTAGAGTGAAGGTTCAATCTAGAAAAGATAAACCAGAGGAGAAGATCATGCCATTAGAGTTTAAAACTGGAAAAGCACCCAGTAGCCAGACATCCATAGAACATAATGCCCAAGTAATTTTGTACACTCTACTGATGTCTGAAAGGTACCAGAAGACCATTGATTCTGGTCTTCTGTATTATCTCCAAACAGATCAGACACAGGGTATTACAGTTCAAAGATCCGACTTAGTTGGGTTAATAATACGGCGTAATGAGCTAGCAAGTGAAATTCTCAAGGCATTAGTCTTGCAGCAACTTCCACCAGTGTTACAGAGTCCTAGCATGTGCAGAGGTTGTCGCCATCTTAATGCCTGTAGCATTTATCATAAGGCGCATGGTGGAAGCATCGAGAGCAAAGAATTGGGAGATGTTTTCGATTCCAATACTAATCACTTGACTTCATCTCATTTGAAGTTCCTCTGCCATTGGGACCATTTGATTGACTTAGAAGCTAAAGGGACTGAGTTTTTAAAGAAAGATATGTGGCGATCATATAATTTGAGGACTCGCAGTGCCGGTGGTGTTTCTTCTATTGTTATTGATGCTTCACAAGGAATACCTTATTCAAAATCTCACAAAGATAATCATTTTGTTTATCGTTTTGTACCGCAAGATACTTCTTGCCCCTCTATAGTTTCTGATGATGATCCTTCTAGTGTCTCATTGAAAATTGATTTAGATTTCACACTGAGAAGTGGTGACTTTGTGATATTGAGTAACGAGTCAAGCCATCAAACTATTGCAAGAGGAGTGATTTCAGATACTAGCAAGAATCATATATCTGTTTCCTTTTCCAAGCTTTTGAGAATTCCCGGGAGGTCTTCCACAGAACATGATCTCCTTAAGCAGGTTTGGAGAATTGACAAAGATGAAGCTGTGACCTTGTTTGCTATTATGAGGTTTAATCTAGTACAACTTTTTCTACAAAATGATCAAAGTGCTCATCTTCGGAGGATGATTGTTGACCTTGAGGCTCCTAGATTTGACAGTGGTTCTATAGTTAGCCAGGATCCTGCAATATCTTACGTTTGGTCTGAGCAGAGTTTGAATGATGATCAACGTAGAGCTATTCTCAAGATACTTGTGGCAAAAGATTATGCACTTATCTTAGGGATGCCTGGAACAGGGAAGACATCCACCATGGTCCATGCTGTGAAAGCCTTGTTGATTAGAGGCACATCCATTTTACTGACAGCCTATACAAATTCTGCTGTTGATAATTTACTAATCAAATTAAAAGCTCAGGGCATTGATTTTGTTCGGATTGGAAGACATGAAGCAGTGAATGAAGAGGTCAGAGAGCACTGCCTCTCAGAAACAAATGTACAGAGTGTTGAAGATATCAAAATAAGGTTAGAACAAGTCAAAGTTGTTGCAGTTACATGTTTGGGCATTTCCAGTCCCCTGCTTGCCAACAAGAGATTTGATGTATGCATTATGGATGAAGCCGGACAGACAACTCTGCCGGTGTCCTTGGGCCCTCTAAGATTTGCTTCAATGTTTGTTCTTGTTGGGGATCATTATCAACTGCCACCACTTGTCCAAAGTACAGAGGCCCTAGAGAATGGCATGGGGATGAGTTTGTTTTGCAGGCTTTCAGAAGCTCATCCACAGGCAATTTCAGCTTTGCAGAGTCAGTACCGTATGTGTCAGGGTATCATGGACTTGTCAAATGTCTTGATATATGGTGACAGATTGAGGTGTGGTTCATCTGAGATAGCTAATGCCAAACTTGAGTTTTCTGGCTTAAGCTGCTGTTTGCCTTGGCTGGAAGATGTTTTGAATCCTGGAAGGCCAGTGATATTTATTGATACTGATATGTTGCCTGCCTTAGAGGAAAGAGATCAGAAAGTTGTAAATAACCCTACTGAAGCTCACATAATTGCCGAGGTTGCAAAGGAATTGGTTAACAATGGAATTGGAGGAGAGCACATTGGCATTATTACACCCTATAACTCACAGGCAAACCTCATCCGACTTGCTACTTGCATAACATCCTTGGAGATACATACCATTGACAAATACCAGGGTAGAGATAAAGACTGTATATTAGTATCTTTTGTACGGTCTTGTAAGAACCCAACAAGCTGCGTGGCTTCTCTACTCGGAGACTGGCACAGGATAAATGTGGCCCTTACTCGTGCTAAGAGAAAGTTGATCATGGTGGGGTCTCGCAAAACTCTAATGAAGGTTCCACTACTGAAGCTTCTCATTAAGAAAGTTGAAGAGCAATCTGGAATTTTGACCTTGTCTAAGAACGATATCTATAGAAAAGGGGAGCTAATTAGATGTTCTCAAATTGCTTGTTCAAAATCAAAACAAACATTAGATGTTCACAATTGA 4101 0.4094 MPPKKKQQREEKPENPKTLPKKKTNNTSSVSSSTPFTKKPIPQPSKYGIQHFFDRHTIQHSQKPVDSVFHPPPEKPNDVKAPADPSSQDVTPDNLLLPVATDPVEVSPEISKSMSRKRFKFSPGMFIKQSQDDGADEVTWKISPVNERLQAVSKYTPKMIQALADSSRTSMLQIRRCSEDKTSLGKGDKVEELLITPTPTASAKAPLSLSKLGLKKLNRDRNVGVNGNPTTVSNSSGVAGERNPFRTPPSMSCRLDKLAKDVEHIGPSDQPFLRQHKKALLELLDQVEDAIGVDSDTVCDKTTHSFKSQDGIANELPVRVNHLVERTESHIPKEVVGDFSNSNYLVLEASENLQPAGSSAAEGPCKVLRLLNEQTGEERAVNLWDEWSYSVIAPGDTVNVIGQFDEGGYCDINHANNFLIVHPDILMSGTRVAASFSCPRRTVLDERLKNNEYSTAALYGTLLHQIFQAGLTNDNPTINFLECYIEVVLRRNVESLFACGVNEKDVRKIMIDGIPKLYNWIMLFRTIEEREDPNVNFGCANGMKNIGISEVIDIEEMVWAPKYGLKGMIDASLRVKVQSRKDKPEEKIMPLEFKTGKAPSSQTSIEHNAQVILYTLLMSERYQKTIDSGLLYYLQTDQTQGITVQRSDLVGLIIRRNELASEILKALVLQQLPPVLQSPSMCRGCRHLNACSIYHKAHGGSIESKELGDVFDSNTNHLTSSHLKFLCHWDHLIDLEAKGTEFLKKDMWRSYNLRTRSAGGVSSIVIDASQGIPYSKSHKDNHFVYRFVPQDTSCPSIVSDDDPSSVSLKIDLDFTLRSGDFVILSNESSHQTIARGVISDTSKNHISVSFSKLLRIPGRSSTEHDLLKQVWRIDKDEAVTLFAIMRFNLVQLFLQNDQSAHLRRMIVDLEAPRFDSGSIVSQDPAISYVWSEQSLNDDQRRAILKILVAKDYALILGMPGTGKTSTMVHAVKALLIRGTSILLTAYTNSAVDNLLIKLKAQGIDFVRIGRHEAVNEEVREHCLSETNVQSVEDIKIRLEQVKVVAVTCLGISSPLLANKRFDVCIMDEAGQTTLPVSLGPLRFASMFVLVGDHYQLPPLVQSTEALENGMGMSLFCRLSEAHPQAISALQSQYRMCQGIMDLSNVLIYGDRLRCGSSEIANAKLEFSGLSCCLPWLEDVLNPGRPVIFIDTDMLPALEERDQKVVNNPTEAHIIAEVAKELVNNGIGGEHIGIITPYNSQANLIRLATCITSLEIHTIDKYQGRDKDCILVSFVRSCKNPTSCVASLLGDWHRINVALTRAKRKLIMVGSRKTLMKVPLLKLLIKKVEEQSGILTLSKNDIYRKGELIRCSQIACSKSKQTLDVHN 1366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00648 1366 CDD DEXXQc_DNA2 934 1134 IPR026851 GO:0017116
Vifa5g00648 1366 FunFam DNA replication helicase 1133 1346 - -
Vifa5g00648 1366 PANTHER DNA2/NAM7 HELICASE FAMILY 199 1329 IPR045055 -
Vifa5g00648 1366 Pfam Domain of unknown function DUF83 584 692 IPR022765 -
Vifa5g00648 1366 Pfam DNA replication factor Dna2 373 574 IPR014808 -
Vifa5g00648 1366 MobiDBLite consensus disorder prediction 220 250 - -
Vifa5g00648 1366 FunFam DNA replication helicase Dna2 536 692 - -
Vifa5g00648 1366 Gene3D - 1133 1340 IPR027417 -
Vifa5g00648 1366 MobiDBLite consensus disorder prediction 20 40 - -
Vifa5g00648 1366 CDD DNA2_N-like 428 661 - -
Vifa5g00648 1366 FunFam DNA replication ATP-dependent helicase/nuclease DNA2 1031 1132 - -
Vifa5g00648 1366 Gene3D - 815 876 - -
Vifa5g00648 1366 MobiDBLite consensus disorder prediction 1 19 - -
Vifa5g00648 1366 MobiDBLite consensus disorder prediction 223 241 - -
Vifa5g00648 1366 Pfam AAA domain 1037 1102 IPR041677 GO:0004386
Vifa5g00648 1366 Pfam AAA domain 935 1026 IPR041677 GO:0004386
Vifa5g00648 1366 CDD SF1_C_Upf1 1135 1328 IPR047187 -
Vifa5g00648 1366 Gene3D - 428 692 IPR011604 -
Vifa5g00648 1366 FunFam DNA replication ATP-dependent helicase/nuclease DNA2 877 1026 - -
Vifa5g00648 1366 Gene3D - 1034 1132 IPR027417 -
Vifa5g00648 1366 Gene3D - 877 1026 IPR027417 -
Vifa5g00648 1366 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 934 1320 IPR027417 -
Vifa5g00648 1366 Pfam AAA domain 1111 1311 IPR041679 -
Vifa5g00648 1366 MobiDBLite consensus disorder prediction 1 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00648 Vifa-Chr5 165811291 165831611 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00648 1 1076 Core DNA Replication Machinery Family AT1G08840 53.650 0.0 1073
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00648 K10742 - gmx:100799415 1776.91