Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00646 ATGCATAGAATAATATCCACGCCGGCGTCTAAATTCCGCCAATTCCGGAGACTCCGCTCCGGCCACACTCCCATAACCGCGGCCAGCGACGAGAAACACGCTTCTCATATCTTATTATGGCGGTACCAGATCTTGGACCCAGACAGCGAGTTTGTTGCCTATTGGAACAGGGTTTTCCTCGTTACCAGTCTTCTTGCGCTTTTTATAGATCCTCTTTACTTCTTCCTCCCCACCGTTGGTGGTCCTGCTTGCTTGACGGCCGACCCTAAGCTCAGTATCTTTCTCACCGTTCTCCGCACGTTTGCTGATTTGTTTTATGTTCTGCATATGGTTATGAAGTTTCGCACTGCCTTTGTTGCTCCTAATTCCAGAATTGTTGGTCGCGGTGATCTTGTTATGGATCCCAGACAAATTGCTATGCGCTATTTGAAGTCTGATTTTGTTATTGACCTTGCTGCCACCATTCCATTACCACAGATTGTTATTTGGTTAGTCATTCCAGCTAGTAGGGGCAAGAAAAGTGATCATGCCAACAACACTCTTGCACTTTTTGTTCTTATTCAGTACGTTCCTAGGCTCTTTCTCATATTCCCTTTGAACCAGCGTATTCAAAAAACAACCGGTGTTATAGCCAAGACTCCCTGGATTGGTGCTGCATACAATCTTATTCTCTACATGCTAGCTAGCCATGTTACAGGAGCAACTTGGTACCTATCATCAATAGGAAGGCAATTCAATTGCTGGAAATCGCAATGTCAACTGGAAAACCGGTCGCACTCCCTTACTTGCTTGCCAAGTTTTCTTGACTGTAATAGTTTGAATCTCCCGGAAAGGCAGTTCTGGCTAAATATCACTCGTGTTATTACCAAGTGTGATGCAAAGAGCAAGATCAACATCAAATACAAATTTGGGATGTTTGCAGATGCTTTCCTCAATGATGTTGTCACTACTAGTTTTAAGGAAAGATACTTCTATTGTCTTTGGTGGGGTTTAAGAAATTTAAGTTCTTATGGACAAAATTTGGACACCACCACATACCTTTTAGAGACACTATTTTGCATTGTCTTATGCATTGCTGGATTGGTTCTCTTCTCACTTTTGATTGGAAACATGCAGACATACTTGCAATCCATGACAGCTAGAGTAGACGAATGGAGGATTCGGAAAAGGGATACAGAGGAATGGATGAGGCATCGACAGCTACCTCAAAATTTGCAGGAACGCGTTCGTCGCTTCGTTCAGTATAAATGGTTAGCTACAAGAGGAGTAGATGAAGAGGCCATACTACTTTCCTTACCTTTGGATCTCCGCCGTGAAATTCAACATCACCTGTGCCTCTCTCTAGTGCGACGAGTGCCATTCTTCTCACAAATGGATGATCAATTACTTGATGCAATCTGCGAACGCCTTGTATCATCATTAAGCACACAGGGAACATATATATTTCAAGAGGATGATCCTGTAGATGAAATGTTGTTTATCATTAGAGGGACATTGGAGAGTTCAACAACAAATGGAGGAAGGTACGGCTTCTTCAATTCGATCACACTAAGGCCAGGAGACTTTTGTGGAGAAGAATTGTTAACATGGGCTTTATTACCAACCTCAACTCTCAATTTACCTGCATCTACTCGTACCGTAAAAGCTATTACCGAAGTAGAAGCTTTTGCGCTAAAAGCAGAGGATCTAAAATTCGTGGCAAGTCAGTTCAAACGTCTTCACAGCAAGAAACTTCAGCATGCTTTTAGATATTATTCGCAGCAATGGAGAACATGGAGTTCGTGTTTCATACAAGCAGCATGGAGAAAGCATCAGAAAAGAAAGGCAACAAGAGAGTTGTTGATTAAGGAAGGCATTTACTACATGGCAGATCCTGAGATTGAGGAATCATCAGGGCATGGCAAAAATTATAATAATCTTGGTGCTACTTTTTTGGCTTCAAGATTTGCTAAAAATACCAAGAAAGGGAATGCTAAGATTCAAGATAGTGATCCTGTGCCGCAGTTGTTTAAACCTCATGAACCTGATTTCTCTCGAGACCACGATCATGTTTAG 2055 0.4224 MHRIISTPASKFRQFRRLRSGHTPITAASDEKHASHILLWRYQILDPDSEFVAYWNRVFLVTSLLALFIDPLYFFLPTVGGPACLTADPKLSIFLTVLRTFADLFYVLHMVMKFRTAFVAPNSRIVGRGDLVMDPRQIAMRYLKSDFVIDLAATIPLPQIVIWLVIPASRGKKSDHANNTLALFVLIQYVPRLFLIFPLNQRIQKTTGVIAKTPWIGAAYNLILYMLASHVTGATWYLSSIGRQFNCWKSQCQLENRSHSLTCLPSFLDCNSLNLPERQFWLNITRVITKCDAKSKINIKYKFGMFADAFLNDVVTTSFKERYFYCLWWGLRNLSSYGQNLDTTTYLLETLFCIVLCIAGLVLFSLLIGNMQTYLQSMTARVDEWRIRKRDTEEWMRHRQLPQNLQERVRRFVQYKWLATRGVDEEAILLSLPLDLRREIQHHLCLSLVRRVPFFSQMDDQLLDAICERLVSSLSTQGTYIFQEDDPVDEMLFIIRGTLESSTTNGGRYGFFNSITLRPGDFCGEELLTWALLPTSTLNLPASTRTVKAITEVEAFALKAEDLKFVASQFKRLHSKKLQHAFRYYSQQWRTWSSCFIQAAWRKHQKRKATRELLIKEGIYYMADPEIEESSGHGKNYNNLGATFLASRFAKNTKKGNAKIQDSDPVPQLFKPHEPDFSRDHDHV 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00646 684 Gene3D Helix hairpin bin 377 445 - -
Vifa5g00646 684 FunFam Cyclic nucleotide-gated ion channel 1 381 445 - -
Vifa5g00646 684 SUPERFAMILY cAMP-binding domain-like 384 579 IPR018490 -
Vifa5g00646 684 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 30 677 - -
Vifa5g00646 684 ProSiteProfiles cAMP/cGMP binding motif profile. 454 584 IPR000595 -
Vifa5g00646 684 SMART cnmp_10 454 585 IPR000595 -
Vifa5g00646 684 CDD CAP_ED 454 585 IPR000595 -
Vifa5g00646 684 Gene3D - 59 376 - -
Vifa5g00646 684 Pfam Cyclic nucleotide-binding domain 477 565 IPR000595 -
Vifa5g00646 684 Pfam Ion transport protein 54 382 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vifa5g00646 684 FunFam Cyclic nucleotide-gated ion channel 1 452 570 - -
Vifa5g00646 684 Gene3D Jelly Rolls 452 572 IPR014710 -
Vifa5g00646 684 MobiDBLite consensus disorder prediction 656 684 - -
Vifa5g00646 684 SUPERFAMILY Voltage-gated potassium channels 46 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00646 Vifa-Chr5 165628456 165631108 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00646 26 684 Ion Channels AT5G14870 66.424 0.0 948
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00646 K05391 - gmx:100802812 1194.1