Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00640 ATGGAATCAGATCCTAGATTTGCAAGAAAATTTGATTACCTTTCTAGGGATTTTCCTAGAAATCCTAGTATAAAATCAGAGATCCCCACATTGGTTCCATTGCACCCAAGTTCAACTCTTTCTCACTCACTATCACATTTCAACACCTTTATGTATCAAAATCAATATACTGAACATGCTCATAAAGAGACTAGATACACTCCATTGTACAAGAATGCATCAACCAATGGATTCCAGGAAAAAAATATGGATGGTCATAATCCAATGACATTTGCACCAAATAACAACAAAAAGGAAGTCATGCATGGACGCCTTAACACTAGCAATGGAATTTGGGACTTATCAAAGCAAAATCTCTTTCGACATGGAGTGAGTCCATCTTTTTCACCATCACTAGTTTATGATGTGAATCCATCTATCGGAATTAGGTCTAATCCTCAAGGAGATCTTTCATTCATTGGTGGAATGGGAAACAAATCCCTCCACAATGACCAAGAACTCCTTCTCAGCGACAAGAAGCAACGTAGGAGAGTTTACAAGAATGTTGAAACTCAACATACACATCTCAATATAACTAAAGGCCAATGGACTGAAAATGAGGACAGGATTCTTGTTGAATTGGTGGATCAATTTGGAACTAGAGAATGGTCTCAGATTGCTAAGTTTCTAAATGGCAGGATCGGAAAACAATGCAGGGAAAGATGGAATAATCATCTTCGACCCGACATTAAGAAAGACTCATGGAGCCAAGAGGAGGACAAAATACTGATTGAAGCTCACAAGAAACTTGGGAACAAATGGGCTGAAATTTCAAAGAAATTGCCTGGGCGCACAGACAACACCATAAAGAACCACTGGAACGCCACTAAGCGTAGCCAAATTGCAAGGAAGAGGCGTAGCAAGCGTAAAAGTTTGAAGCTAAATCAACTTCAAAAGTATATCATTGAAGTCGAAGCGGCAAAGGAAGCTGAAAAGAAGAAGTTGGAGGATTCCATTAGCAGGACGAATATTGGGAATCAACTAAACTTCAACAATGCCAATGGAAGTTCTGAAAGTGGATTCAGTTCTGGAGGTTTGGCTACTCATCCAGAAGGTGAAATTGAAGGCTATGTTCCAGTGATGGTCAATGGTGGTGATGATGGAATGGGAAATGGATTAAGAGCAATGCATTATGATTATGGATCATATGCAATGGAGTTTTTTCCCGAGGTTCCTATGAAGCAGGAAATTGATCTCATGAAGATGTTCTATAAAAATCCATAA 1263 0.3903 MESDPRFARKFDYLSRDFPRNPSIKSEIPTLVPLHPSSTLSHSLSHFNTFMYQNQYTEHAHKETRYTPLYKNASTNGFQEKNMDGHNPMTFAPNNNKKEVMHGRLNTSNGIWDLSKQNLFRHGVSPSFSPSLVYDVNPSIGIRSNPQGDLSFIGGMGNKSLHNDQELLLSDKKQRRRVYKNVETQHTHLNITKGQWTENEDRILVELVDQFGTREWSQIAKFLNGRIGKQCRERWNNHLRPDIKKDSWSQEEDKILIEAHKKLGNKWAEISKKLPGRTDNTIKNHWNATKRSQIARKRRSKRKSLKLNQLQKYIIEVEAAKEAEKKKLEDSISRTNIGNQLNFNNANGSSESGFSSGGLATHPEGEIEGYVPVMVNGGDDGMGNGLRAMHYDYGSYAMEFFPEVPMKQEIDLMKMFYKNP 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00640 420 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 188 243 IPR017930 -
Vifa5g00640 420 Gene3D - 247 289 - -
Vifa5g00640 420 Coils Coil 307 327 - -
Vifa5g00640 420 CDD SANT 247 290 IPR001005 -
Vifa5g00640 420 ProSiteProfiles Myb-like domain profile. 240 290 IPR001005 -
Vifa5g00640 420 FunFam Transcriptional activator Myb isoform A 192 245 - -
Vifa5g00640 420 Gene3D - 192 244 - -
Vifa5g00640 420 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 244 294 IPR017930 -
Vifa5g00640 420 Pfam Myb-like DNA-binding domain 196 254 - -
Vifa5g00640 420 CDD SANT 196 239 IPR001005 -
Vifa5g00640 420 SUPERFAMILY Homeodomain-like 190 286 IPR009057 -
Vifa5g00640 420 PANTHER MYB PROTEIN-RELATED 179 312 - -
Vifa5g00640 420 ProSiteProfiles Myb-like domain profile. 188 239 IPR001005 -
Vifa5g00640 420 SMART sant 244 292 IPR001005 -
Vifa5g00640 420 SMART sant 192 241 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00640 Vifa-Chr5 163919525 163920992 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00640 191 314 MYB Transcription Factor Family AT4G18770 64.516 7.35e-54 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa5g00640 Myb_DNA-bind_6 5.3e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00640 K09422 - psat:127129356 617.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00640 5 163919525 163920992 Vifa5g00640 5 163919525 163920992 ECH