Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00639 ATGGTGGAAAATGGAGAACAAATTCGAAGTCCCGTGATCCGAAAGAAATCGCCTTTGATGGAATCAAATAGCCAAAACATGGCTTCTCTTATCAGTCCTAGGTTCAAATCTGCTGCTGCTATGGCTGGTTGGGACGAAGAAGCACTTTTGCTTGCAGCTCTCATTGTTGAAGATACCCCAGATCGAGATTCCAAACAAAAGAAACGTCTTGTTTTGAGTTCCAAATCGCCGCTATCCAATTCATCAAGGAAACGTAGAGCTCTGAGGAATCCACAACCTATTGTTCTTGATCTTGATGAAGAAGAAACCTCCAAAAAGGATAGTGGGAAGAAGAAGAGAGAAAAGAAGAATTGTGTCGGCGAAGAAAGTAAGGTTGGAGAAAAGGAATTGACTAAGAAAGGATCTGATGTTGATTCGAATAGTTCTGGTCTTCCTTGTATGGATAAGCTAAGGGAGGAGCTTTCATGTGCAATTTGTTTGGAGATATGCTTTGAGCCAAGTACCACTCCTTGTGGTCATAGCTTTTGTAGAAAATGTCTGAAGTCTGCTGCAGACAAGTGTGGCAAAAAGTGTCCCAAATGCAGGCAATTGATAAGCAATGGTCGATCATGCACGGTGAACACAGTTCTCTGGAACACGATTCAACTTCTATTTCCTCAAGAAATTGAAGCAAGGAAAGTTGCTGCTAGCGCCATAAATAATAGACAAGCTGTTCAGAATCCAATTCCAGAAACAACATTTTATACTAGCACAAGGAATAGAAGTTTACAACCATATCCATACAGTAGGGGTATGAATTCAAGGAGAAATGAGGCGGTGACAACACAGGATGAAGAGGATGCTGCATTGGCCAGAAGGCTACAAAGAGAGATAGATAGAGAAAACAACAACAGTAGAACTTCAGCATTATCATCAATTGTAAGAGCAAGGTCAAGAAGAGGGGTTTCTAACCAAGATGAAGATGCTGCTTTTGCTCTAAGGTTGCAAAGGAATGAGTTTATGCAAGCTTTTAGAAATAGCAGCCAGGAACCGTCATCTTCTTCTTCCTCCACATTATTAGCTGGACCAAATTTGAGGGCTATGGCAACTAGAGCCATGAATCTTCGTAATAGAGATAGAAGGGTATAA 1128 0.4113 MVENGEQIRSPVIRKKSPLMESNSQNMASLISPRFKSAAAMAGWDEEALLLAALIVEDTPDRDSKQKKRLVLSSKSPLSNSSRKRRALRNPQPIVLDLDEEETSKKDSGKKKREKKNCVGEESKVGEKELTKKGSDVDSNSSGLPCMDKLREELSCAICLEICFEPSTTPCGHSFCRKCLKSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLLFPQEIEARKVAASAINNRQAVQNPIPETTFYTSTRNRSLQPYPYSRGMNSRRNEAVTTQDEEDAALARRLQREIDRENNNSRTSALSSIVRARSRRGVSNQDEDAAFALRLQRNEFMQAFRNSSQEPSSSSSSTLLAGPNLRAMATRAMNLRNRDRRV 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00639 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 225 IPR013083 -
Vifa5g00639 375 MobiDBLite consensus disorder prediction 338 356 - -
Vifa5g00639 375 ProSitePatterns Zinc finger RING-type signature. 171 180 IPR017907 -
Vifa5g00639 375 PANTHER UNCHARACTERIZED 317 367 - -
Vifa5g00639 375 ProSiteProfiles Zinc finger RING-type profile. 156 195 IPR001841 -
Vifa5g00639 375 MobiDBLite consensus disorder prediction 254 271 - -
Vifa5g00639 375 MobiDBLite consensus disorder prediction 62 140 - -
Vifa5g00639 375 MobiDBLite consensus disorder prediction 1 24 - -
Vifa5g00639 375 SUPERFAMILY RING/U-box 148 219 - -
Vifa5g00639 375 MobiDBLite consensus disorder prediction 71 87 - -
Vifa5g00639 375 SMART ring_2 156 194 IPR001841 -
Vifa5g00639 375 MobiDBLite consensus disorder prediction 254 279 - -
Vifa5g00639 375 Pfam Zinc finger, C3HC4 type (RING finger) 156 194 IPR018957 GO:0046872
Vifa5g00639 375 MobiDBLite consensus disorder prediction 95 135 - -
Vifa5g00639 375 MobiDBLite consensus disorder prediction 338 357 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00639 50 249 C2H2 Transcription Factor Family AT5G39550 25.490 1.50e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00639 - - gmx:102666585 418.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00639 5 163464219 163466074 Vifa5g00639 5 163464219 163466074 ECH