Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00624 ATGCAAGGTAATTCAAGGTTCAAGGCATTCAAGGCAGGGTTTGTTCAACATGGCATACCTGGACATCCTAAAACATTTCATTACCTTAACCAGTCGAATTGCTTTGAACTGGCTAATATAAGTGATTCTCGTGAGTATCTTGCCACTAGGAGAGCTATGGATATTGTTGGAATAAGTCAAAAAGAGCAGGAAGCAATTGTCCGAGTTGTTGCTGCAATTCTTCATATTGGTAATATTGAGTTTGCCAAAGGAAATGAAGTTGATTCATCGGTTCCAAAAGATGATAAAGCCAGTTTTCACTTAAAAACAACTGCTCCCTGCAAAACGCAATGCAAATTCACAAAAGGGCATTTTGCCGGACAACCCAGTCTCACCAACTCTACTTCCTTGCTACTTTCTGCATGCCAAGAACATCAGCATCTATCGATTGTATCTGTATCAGTTCCTTCTGAAAGAGAATTGGACCTATCTGGCAATGATGTTCAGCCTGCTGAAGATTCTTCCCTTGTACCAGCTTACACGGCTGATGAAGATTTCAATCCGAATAGCCCCAAAAAGAAAAAGCGTAAGTCAGAGCCAGTTGGAGATACTTCTGAGGGCTGCAAACGCTGTAATTGCAAGAAATCTAAGTGCCTGAAACTTTATTGTGAGTGTTTTGCTGCTGGTGTCTACTGCATAGAACCCTGCTCCTGTCAGGATTGCTTCAACAAACCTGTTCATGAAGATACAGTTCTTCAAACTCGAAAGCAAATTGAATCTCGTAACCCTCTTGCATTTGCTCCTAAAGTCATTCGAAGTGCTGACTCTGTGCCTGAAATTGGGATTGACCCCAACAAAACTCCAGCTTCAGCCCACCACAAAAGAGGGTGCAACTGCAAGAAATCAAGCTGCCTAAAGAAATATTGTGAATGCTATCAGGGTGGTGTTGGTTGCTCCATTGGCTGCAGATGTGAAGAGTGCACACCGCATATTTTCTGTTGTTCTTGTGCCATCGTCAGGGATTTCACTGTATCAGAAAGATTGAAGACTAGTGTACATGTTAATTTGGTTTTCTATCTAATTGTGGGATCTATTGGCCTTTTCGGAATTATTCTTCTCATTATGATGCACAGGAGCTGGAGTGGGAGTCTTTTGGGATTTGCTATGACTTGCTCAAATACACTTGGACTTGCTACGGGTGCATTTCTTCTTGGCTTTGGTTTAAGTGAAATTCCTAAAAGCATTTGGAGAAATGCCGCTCCCACAAAATTGCCAGTGAAGGTTAAAGCAGGTTTTCTCGGATCAGTGAAACTTAAGGTTCCGTGGAGTAGGCTTGGCCAAGATCCTGTTTTAGTATATTTGGATCGCATTTTCTTATTAGCTGAACCTGCAACACAAGTTGAGGGATGTAGTGAATATGCAGTCCAAGAAGCTAAGAAGAGCCTAATGCAGGAGACGGAATTGAAACTGTGGGAGAAGTTACAACAAATACAGTCAGAAATGAATAAGTCATGGTTGGGATCCCTCATCAGCCCCATTATTGGAAATTTGAAGCTTTCAATTTCTAATATTCACATCAGATACGAAGACAGTGAGAGCAATCCAGGGCACCCATTCGCAGCTGGTGTTAGTTTGGACAAACTCTCGGCTGTGACAGTTGATGATAGCGGGAAAGAGACTTTTATTACTGGAAGTGCACTAGATCGCATTCAGAAGTGTGTTGAACTTGATTGGCTTGCCATTTATTTAGATTCAGACATTATTCCATGGCATGTTGACAAAGCATGGGAAGATTTGCTTCCTTCTGAATGGTTTCAGATATTTAATTTTGGAACTAAAGATGGGAAACCAGCAGATACTTTGTCGCGAAAACACTCATATATTCTGCAGCCGGTAACTGGGAAAGCAAAGTACTCAAAGCTGCATTCGAGTGAAGTTGCTGATAGCAAACAACCATTGCAGACGGCTGTTGTGAATTTGGATGATGTTACAATCAGCTTATCTAAGGATGGATACAGAGATATGATGAAATTAGCAGACAACTTTGCTACATTTAATCAACGTCTAAATGAAGAGGACTGGAACCAGTTAAATAAAAGGATTGGGTATAAGGAGGGTGTTATGGTAGCTACTGATTCTCGGGCTAGTATGGGAGGATATATATCATCACAGTCTGTGAAGAAAATTATTGAAATTAATCCATACATGCTTGGGACAATGGCTGGAGGTGCTGCTGATCGCCAATTTTGGCATAAGAATCTTGGCATCAAGTGCCGCTTGCATGAGTTGGCAAATAAAAGAAGAATTTATGTAACAGGAGCCTCTAAGTTACTTGCAAATATTTTATACTCTTATCGTGGAATGGGATTATCTGTCGGTACCATGATTGCTGGATGGGATGAAACGGGTCCTGGTCTATATTATGTTGATAGTGAAGGTGGAAGACTTAAAGGCACTAGATTCTCAGTTGGATCTGGTTCACCATATGCTTATGGTGTATTGGACAGCGGGTACAAATATGACATGTCAGTTGAGGAAGCTTCTGAACTGGCTCGAAGAGCAATTTATCATGCAACATTTCGTGATGGAGCTAGTGGTGGAGTTGCTAGCGTTTACTACAAGGGACCAACTGGAGGGAAGAAATTGTCTGGTGATGATGTTGGTGAACTTCACTACCATTACAACCCGGTTACCCCTAGCACCGTGGAGCAAGAAATGGTTGAGGCAGCTGGACCTTGA 2718 0.4172 MQGNSRFKAFKAGFVQHGIPGHPKTFHYLNQSNCFELANISDSREYLATRRAMDIVGISQKEQEAIVRVVAAILHIGNIEFAKGNEVDSSVPKDDKASFHLKTTAPCKTQCKFTKGHFAGQPSLTNSTSLLLSACQEHQHLSIVSVSVPSERELDLSGNDVQPAEDSSLVPAYTADEDFNPNSPKKKKRKSEPVGDTSEGCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKPVHEDTVLQTRKQIESRNPLAFAPKVIRSADSVPEIGIDPNKTPASAHHKRGCNCKKSSCLKKYCECYQGGVGCSIGCRCEECTPHIFCCSCAIVRDFTVSERLKTSVHVNLVFYLIVGSIGLFGIILLIMMHRSWSGSLLGFAMTCSNTLGLATGAFLLGFGLSEIPKSIWRNAAPTKLPVKVKAGFLGSVKLKVPWSRLGQDPVLVYLDRIFLLAEPATQVEGCSEYAVQEAKKSLMQETELKLWEKLQQIQSEMNKSWLGSLISPIIGNLKLSISNIHIRYEDSESNPGHPFAAGVSLDKLSAVTVDDSGKETFITGSALDRIQKCVELDWLAIYLDSDIIPWHVDKAWEDLLPSEWFQIFNFGTKDGKPADTLSRKHSYILQPVTGKAKYSKLHSSEVADSKQPLQTAVVNLDDVTISLSKDGYRDMMKLADNFATFNQRLNEEDWNQLNKRIGYKEGVMVATDSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADRQFWHKNLGIKCRLHELANKRRIYVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKYDMSVEEASELARRAIYHATFRDGASGGVASVYYKGPTGGKKLSGDDVGELHYHYNPVTPSTVEQEMVEAAGP 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00624 905 Gene3D - 11 56 - -
Vifa5g00624 905 Pfam Myosin head (motor domain) 22 97 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa5g00624 905 Pfam Proteasome subunit 696 865 IPR001353 GO:0005839|GO:0051603
Vifa5g00624 905 CDD proteasome_beta_type_5 696 876 - -
Vifa5g00624 905 Pfam Vacuolar sorting-associated protein 13, N-terminal 498 681 IPR031646 -
Vifa5g00624 905 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 696 887 IPR029055 -
Vifa5g00624 905 Gene3D Myosin VI head, motor domain, U50 subdomain 57 145 - -
Vifa5g00624 905 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 94 IPR027417 -
Vifa5g00624 905 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 694 897 IPR029055 -
Vifa5g00624 905 SMART CXC_2 285 324 IPR033467 -
Vifa5g00624 905 SMART CXC_2 199 240 IPR033467 -
Vifa5g00624 905 PRINTS Proteasome component signature 853 864 IPR000243 GO:0004298|GO:0005839|GO:0051603
Vifa5g00624 905 PRINTS Proteasome component signature 828 839 IPR000243 GO:0004298|GO:0005839|GO:0051603
Vifa5g00624 905 PRINTS Proteasome component signature 696 711 IPR000243 GO:0004298|GO:0005839|GO:0051603
Vifa5g00624 905 PRINTS Proteasome component signature 817 828 IPR000243 GO:0004298|GO:0005839|GO:0051603
Vifa5g00624 905 ProSiteProfiles Proteasome beta-type subunit profile. 688 867 IPR023333 -
Vifa5g00624 905 ProSiteProfiles Myosin motor domain profile. 1 95 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa5g00624 905 MobiDBLite consensus disorder prediction 180 201 - -
Vifa5g00624 905 MobiDBLite consensus disorder prediction 154 201 - -
Vifa5g00624 905 Pfam LMBR1-like membrane protein 333 498 IPR006876 -
Vifa5g00624 905 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 121 320 IPR044522 GO:0003700
Vifa5g00624 905 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 288 321 IPR005172 -
Vifa5g00624 905 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 202 237 IPR005172 -
Vifa5g00624 905 Pfam N-terminal region of Chorein or VPS13 416 473 IPR026854 -
Vifa5g00624 905 FunFam Proteasome subunit beta 692 898 - -
Vifa5g00624 905 ProSiteProfiles CRC domain profile. 200 325 IPR005172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00624 Vifa-Chr5 156691009 156694995 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00624 169 320 CPP Transcription Factor Family AT3G22760 76.316 1.34e-76 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Vifa5g00624 VPS13 1.4e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00624 K19525 - ccaj:109800530 480.33