Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00609 ATGCAAGAAGAAAACAACGTAGCTTTACTCTTCACATCCGACGGTGGAGCAACGCTAAACGGTCTCCTGGAAGACGAATCGACAACGCTAACAGCGACGACGGCGGAGGAGGATGAATCACTCTCAGTGATGAGGTGTCCGGCCTTGGATGGGTTAGTAAAGAAAGCGATGAGGAGGAAGAGGAACGATGAGGAGGAGAGATGGGTTAGTTATTCGGAGGTTGTGGAAGAGAAGAAGGAAATGATGGAGGAGGTGAATAGTTGTGTTGGGAGTGAAACGACGTCGTTTTTTGGGTCTTTGTCTTTGAAGCTCGATCATGATGGAATATTGAATGCTTGGTCTGATAAAGGATCTCTTTATGTTGATGCTGCTGATGATGCCCCACAGACTGTTCCTGATTTGTTCAATGCTTCCACCATCCTCCCCAATGTAATGTGGGATGGTTATGGTTGTGATGTTGCTAGGAACACATGGAAAGTTCCTGAAGGTTGTGGACCTAACAATAACAATGTGAATGTGAAGGAAGAAACGGGTTGGAAGGTTGGGCAGAGAGAGGCAAGTTTGTTGAGATACAAAGAAAAAAGGCAAAGTAGACTCTTTGCTAAGAGGATTCGTTATGAAGTTCGCAAGTTGAATGCTGAAAAACGACCTAGGATGAAGGGACGGTTTGTGAAGAGAGAATAA 684 0.4503 MQEENNVALLFTSDGGATLNGLLEDESTTLTATTAEEDESLSVMRCPALDGLVKKAMRRKRNDEEERWVSYSEVVEEKKEMMEEVNSCVGSETTSFFGSLSLKLDHDGILNAWSDKGSLYVDAADDAPQTVPDLFNASTILPNVMWDGYGCDVARNTWKVPEGCGPNNNNVNVKEETGWKVGQREASLLRYKEKRQSRLFAKRIRYEVRKLNAEKRPRMKGRFVKRE 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00609 227 Pfam CCT motif 184 226 IPR010402 GO:0005515
Vifa5g00609 227 ProSiteProfiles CCT domain profile. 184 226 IPR010402 GO:0005515
Vifa5g00609 227 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 17 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00609 Vifa-Chr5 149916550 149918136 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00609 99 226 C2C2-CO-like Transcription Factor Family AT1G73870 42.308 4.56e-22 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa5g00609 CCT 2.4e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00609 - - psat:127128050 405.986