Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00588 ATGGAAAAACACCACCAGCCTATGAGCCACGACAAAGCAAGCGAGTTTCGACCATTCTGTTCGGCGGTAACACCTCATATGCGTACATTTCACCTATCATGGTTGAACCTCTTCTCTTGTTTCTTCACCACCTTCTCCATCCCTCCTCTCCTCCCAATCATCCGCCACGACCTCAACCTCACAGCCGGTGACATAGGCAGAGCAGGCTCAGCTTCTTTCGCGAGCTCCATCCTCTCCCGCCTACTCATGGGTCCAATCTGCGACCTCGTGGGTCCCCGTAGAGCCTCCGGTATTCTCTCTCTCATAACCGCACCTGTCATCCTCCTCACCTCTATTGCCTCTACTCCCGGCCAATTCATCGCCGTTCGTTTCCTCGTGGGCTTCTCTCTCGCCAATTTCGTAGCAAACCAGTTCTGGATGAGCTCCATGTTCACTGAATCTGTTGTTGGCACAGCCAATGCTTTCTCTGCTGGCTGGGCGAACACGGGCTCCGGCGTCACTCAACTTCTGATGCCTTTAATTTACTCCTCTCTTCTAACTTATCTCCCATCCTCCACCGCTTGGCGATACTCATTCATAGTTCCCGCCGTTTTCCAAGCAGTTACAGGTGTGTTAGTTTTAGCATTCGGCCATGACAACACAAACAACAGAAAACAGAATAACAATATTCCTCTAGCACCAAAGGAGAATAAGTTAAAAGTGATATTTGGTGGGTTAGGGGATTACAGAGGATGGATATTGGGGTTAGTTTACGGATTCTCGTTTGGGGTTGAAATGACAACAGATAACATAATAGCACAATATTTTTATGACAGATTTGGGGTGAAGCTGCAAACAGCAGGAACAATAGCAGCATGTTTTGGGATGACGAATTTGTTTGCAAGACCAATGGGAGGGTTTGTTTCAGACAAAATGGGGAAAAGGTTTGGTGTGAGAGGGAGATTGTGGGGTTTGTGGATTGTTCAAACGGTGGCGGGTTTGCTGTGTATGTTGCTTGGACGAGTTGACTCGTTGTGGAGTTCTATTACTGTTATGTGTTGTTTCTCTGTTTCTGTTCAAGCTGCTTCTGGCCTCACGTTTGGTGTGGTTCCCTTTGTTTCTAAAAGGTCACTAGGGGTAATATCAGGAATGACAGGGAGTGGTGGAACAATGGGAGCTGTTGTAACTCAAATGCTGTTATTCTCAGGCGACAACTTATCAAAGCAAGCAAGCATATCACTAATGGGCTTAATGATGATATTATGTACTCTTCCTGTTACCTTAATCTACTTCCCTCAATGGGGTGGCATCTTTTCTGCTCCTTCTCCACATTATGATTATGATCAAGAAAACTATACCTTGTTGGAGTAA 1350 0.463 MEKHHQPMSHDKASEFRPFCSAVTPHMRTFHLSWLNLFSCFFTTFSIPPLLPIIRHDLNLTAGDIGRAGSASFASSILSRLLMGPICDLVGPRRASGILSLITAPVILLTSIASTPGQFIAVRFLVGFSLANFVANQFWMSSMFTESVVGTANAFSAGWANTGSGVTQLLMPLIYSSLLTYLPSSTAWRYSFIVPAVFQAVTGVLVLAFGHDNTNNRKQNNNIPLAPKENKLKVIFGGLGDYRGWILGLVYGFSFGVEMTTDNIIAQYFYDRFGVKLQTAGTIAACFGMTNLFARPMGGFVSDKMGKRFGVRGRLWGLWIVQTVAGLLCMLLGRVDSLWSSITVMCCFSVSVQAASGLTFGVVPFVSKRSLGVISGMTGSGGTMGAVVTQMLLFSGDNLSKQASISLMGLMMILCTLPVTLIYFPQWGGIFSAPSPHYDYDQENYTLLE 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00588 449 CDD MFS_NRT2_like 30 421 IPR044772 GO:0015112
Vifa5g00588 449 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 10 446 IPR044772 GO:0015112
Vifa5g00588 449 Gene3D MFS general substrate transporter like domains 25 220 IPR036259 -
Vifa5g00588 449 SUPERFAMILY MFS general substrate transporter 15 423 IPR036259 -
Vifa5g00588 449 ProSiteProfiles Major facilitator superfamily (MFS) profile. 29 421 IPR020846 GO:0022857
Vifa5g00588 449 Pfam Major Facilitator Superfamily 34 387 IPR011701 GO:0022857|GO:0055085
Vifa5g00588 449 Gene3D MFS general substrate transporter like domains 230 428 IPR036259 -
Vifa5g00588 449 FunFam Probable high-affinity nitrate transporter 2.4 22 221 - -
Vifa5g00588 449 FunFam Nitrate transporter 2.1 228 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00588 Vifa-Chr5 141237173 141256114 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00588 7 434 Inorganic Solute Cotransporters AT5G14570 62.754 0.0 562
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00588 K02575 - cave:132180989 595.119