LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa5g00585	ATGGAGTTGCCTGTTGATGGAGTTGAATCTTTACCAGAAGTTCAGAATTCAGTTTCTGGGATAGATCACAATCCGCCTTCGACATCTGGGATCCCCCATTCTTCTCGGCTGCCTTTACGGGCATCTAGAGATCAAGAGCCTTCTTCCAATCATCATAATCAAGGAAGGATGAATGATATCTATCAAGAGGCTAACAATGTGGATCATCAAGTTTCAACTAAAATGGAGAAGCAATATTATAAGCGTAATGGTTCGTCGAAACAAGTTGTTGATCAGAAAAACTCTGAGATTACATTTTGCTCAAGTCCTCAGAATAGTTTATATTCTGCCACTGTTTATTCAGAAGCAAAAGAAAGTTTCACCAACACCGGAATCAATGAATGTGTTAGTGTCGATAAGTCAGTTGAAAGTGGAGAGGTTAGTAATTCATGTGAGAGCAGGAAGACGAGCATATGTAGAGGGAGTACTGGAAGTGATGTTAGTGATGAGAGCAGCATCAGTAGTTTGAGCAGTTCTTTGTATAAACCACATAAAGCAAATGATGTAAGATGGGAAGCAATTCAAGCGATCCGAGTTCGGGATGGTGGATTGGAAATGAGACATTTTAGGTTGTTGAAGAAATTGGGATGTGGAGACATAGGAAGTGTATATCTAGCAGAGTTAAGTAGTACGAGGACTTGTTTTGCTATGAAAGTAATGAACAAGACAGAATTGTCAAGTCGCAAGAAGCTTCCGAGAGCACAGACAGAGAGGGAGATATTGCAGTCTCTAGATCATCCATTTCTACCGTCGTTGTACACACACTTTGAGACAGAATCATTCTCTTGCTTGGTTATGGAGTTTTGTCCTGGTGGGGATCTCCATGCACTCAGGCAAAGACAACCTGGGAAGTATTTTTCAGAACATGCTGCAAGGTTTTATGTGGCAGAAGTTCTCCTTGCTTTAGAGTACTTGCACATGCTTGGGATCATCTACAGAGACCTCAAACCTGAGAATGTGTTGGTGAGAGAAGATGGTCACATCATGCTATCAGATTTCGATCTCTCTCTGAGATGTGCCGTCAGTCCAACTCTGCCAGACTGCATCAAACCGTCATGCTTCACGCCGCGTTTTCTATCAGGCAAATCCAAGAAGAAAGAAAAGAAGTTGAAACCTAAGAATGACGTGCACAATCAGGTGACACCTCTCCCTGAGCTCATGGCCGAGCCCACAAATGCCCGATCAATGTCCTTTGTTGGCACGCACGAGTACTTGGCACCCGAAATCATCAAAGGCGAAGGTCACGGCAGTGCTGTAGACTGGTGGACGTTCGGTATATTCTTATACGAGCTTTTGTTTGGTAGAACACCATTCAAAGGTTCAGCAAATCGAGCGACTCTATTTAATGTAGTTGGGCAGCCCTTAAGATTTCCTGAATCCCCTAGTGTTAGCTTTGCTGCTAGGGACTTAATTAGGGGTCTACTTGTGAAAGAGCCTCAACACCGTCTTGCGTATAGACGCGGAGCTACAGAGATAAAACAACATCCATTCTTTCAAAATATTAACTGGGCGCTGATCCGTTGTGCAACTCCTCCGGAAGTGCCAAGACAGGCCATGAAAGAAGCACTGATAGCCGAGAAGAAAGCACCTGGTGTGAAGCCTTCTGGTAACTATTTAGATATTGATTTCTTTTGA	1674	0.4331	MELPVDGVESLPEVQNSVSGIDHNPPSTSGIPHSSRLPLRASRDQEPSSNHHNQGRMNDIYQEANNVDHQVSTKMEKQYYKRNGSSKQVVDQKNSEITFCSSPQNSLYSATVYSEAKESFTNTGINECVSVDKSVESGEVSNSCESRKTSICRGSTGSDVSDESSISSLSSSLYKPHKANDVRWEAIQAIRVRDGGLEMRHFRLLKKLGCGDIGSVYLAELSSTRTCFAMKVMNKTELSSRKKLPRAQTEREILQSLDHPFLPSLYTHFETESFSCLVMEFCPGGDLHALRQRQPGKYFSEHAARFYVAEVLLALEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLPDCIKPSCFTPRFLSGKSKKKEKKLKPKNDVHNQVTPLPELMAEPTNARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGSANRATLFNVVGQPLRFPESPSVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFQNINWALIRCATPPEVPRQAMKEALIAEKKAPGVKPSGNYLDIDFF	557

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa5g00585	557	MobiDBLite	consensus disorder prediction	16	56	-	-
	Vifa5g00585	557	FunFam	serine/threonine-protein kinase D6PK-like	286	353	-	-
	Vifa5g00585	557	PANTHER	FLIPPASE KINASE 1-RELATED	60	533	-	-
	Vifa5g00585	557	Pfam	Protein kinase domain	408	511	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa5g00585	557	Pfam	Protein kinase domain	203	377	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa5g00585	557	ProSiteProfiles	Protein kinase domain profile.	202	511	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa5g00585	557	Gene3D	Transferase(Phosphotransferase) domain 1	405	529	-	-
	Vifa5g00585	557	CDD	STKc_phototropin_like	200	531	-	-
	Vifa5g00585	557	Gene3D	Phosphorylase Kinase; domain 1	200	285	-	-
	Vifa5g00585	557	FunFam	Serine/threonine-protein kinase D6PK-like	200	285	-	-
	Vifa5g00585	557	SMART	serkin_6	202	511	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa5g00585	557	FunFam	serine/threonine-protein kinase D6PK-like	406	529	-	-
	Vifa5g00585	557	MobiDBLite	consensus disorder prediction	16	35	-	-
	Vifa5g00585	557	Gene3D	Transferase(Phosphotransferase) domain 1	286	374	-	-
	Vifa5g00585	557	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	323	335	IPR008271	GO:0004672\|GO:0006468
	Vifa5g00585	557	SUPERFAMILY	Protein kinase-like (PK-like)	176	530	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa5g00585	Vifa-Chr5	137953865	137956370	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa5g00585	145	557	AGC Kinase Gene Family	AT5G47750	72.807	0.0	660

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Vifa5g00585		Pkinase	5.3e-39	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa5g00585	K08286		-	gmx:100802402	847.425