Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00578 ATGGGTCGTCGCAAAATTGAGATCGAGATGGTGAAAGATCCCAACACAAGACAAGTTACATTTTCAAAACGGAGAACCGGTTTATTCAAGAAGGCAAATGAATTGTCACTTTTGTGCAAAGCAGAAGTGGCCATTGTTGTATTTTCTCCAGGTAATAAGCCTTACTCTTTTGGTCATCCAGGAGTTGATATTGTTGCTGAAAAATATCTCCAACAAGGGTCTACATCAAGTGACTCTCAAGAAAACTCCTCTATTGATGCTCCTAATATGGAGAAATTGGAGAAATTGAATCAAGAACTTGTTGAAGTTTTGGCAGAAATTGATGAAGCTGAAAAGGAAGCTAAGAGTCAGGATCAGATTCTAAAAGAAAAGGATGAGAAAAATCTTATCGAGCTTAAAGAATTGAGAGATTCATATAATGAGTTTCTAGAATCTGTAAAATTACGTCTTAGTGATATTGAGATATCACAATACATGATGCTTCTCGCAAAGGATCCTGTGGTAGGAGTAAAAGCAAAATCTGCAAAAAACAAAAGAGGATCTAAAAATTAA 552 0.3569 MGRRKIEIEMVKDPNTRQVTFSKRRTGLFKKANELSLLCKAEVAIVVFSPGNKPYSFGHPGVDIVAEKYLQQGSTSSDSQENSSIDAPNMEKLEKLNQELVEVLAEIDEAEKEAKSQDQILKEKDEKNLIELKELRDSYNEFLESVKLRLSDIEISQYMMLLAKDPVVGVKAKSAKNKRGSKN 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00578 183 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vifa5g00578 183 SUPERFAMILY SRF-like 1 72 IPR036879 GO:0003677|GO:0046983
Vifa5g00578 183 Coils Coil 90 127 - -
Vifa5g00578 183 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vifa5g00578 183 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vifa5g00578 183 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vifa5g00578 183 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vifa5g00578 183 PANTHER MADS BOX PROTEIN 3 147 - -
Vifa5g00578 183 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Vifa5g00578 183 Gene3D - 14 84 IPR036879 GO:0003677|GO:0046983
Vifa5g00578 183 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00578 Vifa-Chr5 132399632 132400183 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00578 1 164 Type I MADS-box Gene Family AT2G34440 44.693 7.56e-40 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vifa5g00578 SRF-TF 3.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00578 - - mtr:11439559 240.736