Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00576 ATGGCTGGGCAATCGAACCATGAACTTTCACTATTTTCAGCAGAGGAGCTTGAATTCATTGCTGAGGATGAGATAATCGACATCGTTCCTAATCTCAAAATGGATCCTCTCTGCCTAGTTTCTGGAGATTTTGGTCCATTTACGCCACAGATTGTTACTCAAGTACCACTTTGGTTGGCAATTGCTCTCAGGAGGAGAGGCAAGTGCTCCATTGTCCCTCCCCAATGGATGTCTGTCGAGAAGTTGACACAAGTGTTGGAAGAAGAACGAGACTCTCAAGAGATGTCAGAGCATTTGCCATTTCATTACGTAGAAATTTCAAGACTTCTTTTTGACCATGCACGTGACAACATTCCTGATGCATACATGGTGAGGTCTTTAATTGAGGACATCAGAGATGTAAGGTTTCATAAAGTTGAAACTGACTTGGAAGGATTCAATGGTTTTACAATAGCCGTGAAGGTAATTTCTTCAATGTTTTTGGCGGTACAGTGGTTTGTGAAAGTCTGGAATGTAGCTCCAATGTGA 528 0.4205 MAGQSNHELSLFSAEELEFIAEDEIIDIVPNLKMDPLCLVSGDFGPFTPQIVTQVPLWLAIALRRRGKCSIVPPQWMSVEKLTQVLEEERDSQEMSEHLPFHYVEISRLLFDHARDNIPDAYMVRSLIEDIRDVRFHKVETDLEGFNGFTIAVKVISSMFLAVQWFVKVWNVAPM 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00576 175 Pfam GINS complex protein 53 147 IPR021151 -
Vifa5g00576 175 SUPERFAMILY PriA/YqbF domain 12 72 - -
Vifa5g00576 175 CDD GINS_B_Psf2 13 74 - -
Vifa5g00576 175 SUPERFAMILY GINS helical bundle-like 73 154 IPR036224 -
Vifa5g00576 175 FunFam DNA replication complex GINS protein PSF2 12 77 - -
Vifa5g00576 175 FunFam DNA replication complex GINS protein PSF2 78 161 - -
Vifa5g00576 175 CDD GINS_A_psf2 66 148 - -
Vifa5g00576 175 Gene3D - 78 163 - -
Vifa5g00576 175 Gene3D - 12 77 - -
Vifa5g00576 175 PIRSF GINS_PSF2 2 166 IPR007257 GO:0005634|GO:0006260
Vifa5g00576 175 PANTHER DNA REPLICATION COMPLEX GINS PROTEIN PSF2 7 155 IPR007257 GO:0005634|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00576 Vifa-Chr5 130964217 130966193 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00576 1 147 Core DNA Replication Machinery Family AT3G12530 65.986 7.16e-72 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00576 K10733 - gmx:100780528 270.011