Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00575 ATGGCTGGGCAATCGAACCATGAACTTTCACTATTTTCAGCAGAGGAGCTTGAATTCATTGCTGAGGATGAGATAATCGACATCGTTCCTAATCTCAAAATGGATCCTCTCTGCCTAGTTTCTGGAGATTTTGGTCCATTTACGCCACAGATTGTTACTCAAGTACCACTTTGGTTGGCAATTGCTCTCAGGAGGAGAGGCAAGTGCTCCATTGTCCCTCCCCAATGGATGTCTGTCGAGAAGTTGACACAAGTGTTGGAAGAAGAACGAGACTCTCAAGAGATGTCAGAGCATTTGCCATTTCATTACGTAGAAATTTCAAGACTTCTTTTTGACCATGCACGTGACAACATTCCTGATGCATACATGCTTATTTCTCCTGTGAAGGTGAGGTCTTTAATTGAGGACATCAGAGATGTAAGGTTTCATAAAGTTGAAACTGACTTGGAAGGATTCAATGGTTTTACAATAGCCGTGAAGGTAATTTCTTCAATGTTTTTGGCGGTACAGTGGTTTGTGAAAGTCTGGAATGTAGCTCCAATGTGA 546 0.4194 MAGQSNHELSLFSAEELEFIAEDEIIDIVPNLKMDPLCLVSGDFGPFTPQIVTQVPLWLAIALRRRGKCSIVPPQWMSVEKLTQVLEEERDSQEMSEHLPFHYVEISRLLFDHARDNIPDAYMLISPVKVRSLIEDIRDVRFHKVETDLEGFNGFTIAVKVISSMFLAVQWFVKVWNVAPM 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00575 181 Gene3D - 12 77 - -
Vifa5g00575 181 PIRSF GINS_PSF2 2 172 IPR007257 GO:0005634|GO:0006260
Vifa5g00575 181 SUPERFAMILY GINS helical bundle-like 73 160 IPR036224 -
Vifa5g00575 181 CDD GINS_B_Psf2 13 74 - -
Vifa5g00575 181 CDD GINS_A_psf2 66 154 - -
Vifa5g00575 181 SUPERFAMILY PriA/YqbF domain 12 72 - -
Vifa5g00575 181 Gene3D - 78 169 - -
Vifa5g00575 181 PANTHER DNA REPLICATION COMPLEX GINS PROTEIN PSF2 7 161 IPR007257 GO:0005634|GO:0006260
Vifa5g00575 181 FunFam DNA replication complex GINS protein PSF2 12 77 - -
Vifa5g00575 181 Pfam GINS complex protein 53 153 IPR021151 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00575 Vifa-Chr5 130964217 130966193 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00575 1 153 Core DNA Replication Machinery Family AT3G12530 63.399 3.01e-69 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00575 K10733 - gmx:100780528 263.462