Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00574 ATGAGTTTTAGCAAGTTCCAAAATTTGATTTCATTTTTCAACTTCATCACATTATTACTATGTTGTTCTTCATTCACCACATCATCATCACAACAATTCATGAAAGACAATGAAACTCTAAGCTCAAATAGTGGAAATTTCACCTTAGGATTCTTCACCCCTCAAAACTCCACAGATCGCTATGTAGGAATTTGGTGCAAAACTCAAGACTTTGTTATATGGGTTGCTAACAGAAACCAACCATTGATCAATGATTCTTCTGGAGTTCTCACAATATCAAATGATGGAAATCTTGTTGTGTTGAATGGACAAAAACATGTTATTTGGTCATCAAGTTTGACCAATGTTACATCAAAAACGAATTCTAGTTTCACACTTTCAGATTATGGAAACCTTGTTTTGTCTGAAACAACAACAGGAAGTACAATATGGGAGAGTTTCCAACATCCTTCAAATGCATTATTAGCAAGCATGGTGTTTACAAGTAACATGAAACTCACATCATGGAAAAACCTTTCTGATCCATCCACCGGAAGCTTCTCTCTCAGTATCGAACGGTTGAAGATTCCAGAAGTTTTCATTTGGAAGGGAACTCGTCCCTACTGGCGAAGTGGTCCATGGAATAATCAAATCTTTATAGGGATACAAGACATGGAAACTCTTTATCTTAACGGTTTTCATTTCGAGAAAGACAGGACGACAGGAACTGTTGATTTGTCTTTCAGAGCAGACGACTTTGGACTCTTGATCTATGCCTTGAATCCGCAAGGTCAAATGCATGAAAACTCTTGGAGTATTGAGGAAGAGAAATGGATAGATACATGGACTAGTTATAGATCAGATTGTGATGTCTATGGATTTTGCGGTCCATTTGGAATTTGCAATTCAAAAGGTTCACAGATTTGTAGCTGTTTGGAAGGGTTTGAACCAAGAAACAATCAAGAGTGGAATCAAAAAAATTGGACTAATGGGTGTGTTAGGAAGAAACTTTTACAGTGTGAAAATGCCAAAAATCAAAGCAAGAGTTCACATGGGAATGAAGCAGATAGTTTTTTGAACTTGAGTATGGTAAAAGTACCTGATTTTGCAGAATTTTCGTCTAATGAACGAGATGAATGCAAAAACAAGTGTTTGATGAATTGCTCTTGTACTGCATATTCGTACGTGGATGATATCGGTTGTATGTCTTGGAATGGAAATCTAATTGATATACAACAATTCAAAACCGGAGGAACTGATCTATACGTTCGCGTACCCTATGTCGAGCTTAACATATCAGATAAAGGGCATAAAGGAACAATCATCATTGCTGTTTCAGTTTCGATAGGAATTATCTTGATTGTGATTGTTGCGTATTTCATTTGGATAAAGGATTCAAAACCAGAGAGAAGAAAGAAGCATCATAGGATTTTTCATTTCCACAAAATCGAAAAACCTGAGGAACAGTCAAGTGAAAATGTAATTGGTGAATTGTCACAAGCTAAACTACAAGAGCTATTGCTATATAAATTTGAAAAGCTTGCAACTGCTACAAACAACTTCCATTCATCCAATAAACTTGGACAAGGAGGTTTTGGTCCTGTATACAAGGGAATACTACAAGATGGTAAGGAAATAGCGGTTAAAAGACTTTCGATATCATCCGGACAAGGGTTAAAAGAATTCATGAATGAAGTAGTAGTGATTTCTAAGCTTCAACATCGCAACCTTGTAAGGCTTTTAGGCTGTTGTACTGAAAGAAATGAAAAGATGTTGATGTATGAGTTCATGCCAAATGGAAGTTTGGATGCATATATCTTCGATCCTTCAAGAAATAAACTCTTGGATTGGGAGAAACGATTCAGTATAATTGAAGGAATCGCTCGTGGACTACTCTATCTACATAGAGATTCTAGGCTAAAAATTATACATAGAGATTTGAAGGCGAGTAATATCTTACTAGACGAGGAAATGAATCCAAAAATATCGGACTTTGGTATGGCCAAAATCTTTGAAGTGAGTGAAGATCATGCCAACACACAAAGGATTGTCGGAACATACGGTTATATGGCTCCAGAATATGCAATGCAAGGAGTATTTTCCGATAAATCAGACGTCTTCAGCTTTGGAGTTTTGCTGATAGAGATTGTTTGTGGAAGACGAAACTCAAGCTTTTACGAACATGAAAATTCTTTGACTCTCTTAGGATTTGCATGGACTCAATGGAGGGAAGGAAATATTTTATGTTTAATAGAACCAGAAATATATGATGATAGTAATCATAAGGATATTTTAAGGTGCATACATATAGGACTTCTATGTGTTCAAGAATCAGCAGTAGATAGACCTACTATGGCAATAGTGATTTCTATGCTTAACAGTGAAATTATGGAACTTCCTCCTGCAAGACAACCTGCATTCCTACTGATGCAGAATATGATGCATACGGTGTTTTCTGAAGAAAGAAATGAAGTGTATTCCAATAATGTTGTGAGTATTACAGACCTTCGTGGAAGGTAG 2499 0.3633 MSFSKFQNLISFFNFITLLLCCSSFTTSSSQQFMKDNETLSSNSGNFTLGFFTPQNSTDRYVGIWCKTQDFVIWVANRNQPLINDSSGVLTISNDGNLVVLNGQKHVIWSSSLTNVTSKTNSSFTLSDYGNLVLSETTTGSTIWESFQHPSNALLASMVFTSNMKLTSWKNLSDPSTGSFSLSIERLKIPEVFIWKGTRPYWRSGPWNNQIFIGIQDMETLYLNGFHFEKDRTTGTVDLSFRADDFGLLIYALNPQGQMHENSWSIEEEKWIDTWTSYRSDCDVYGFCGPFGICNSKGSQICSCLEGFEPRNNQEWNQKNWTNGCVRKKLLQCENAKNQSKSSHGNEADSFLNLSMVKVPDFAEFSSNERDECKNKCLMNCSCTAYSYVDDIGCMSWNGNLIDIQQFKTGGTDLYVRVPYVELNISDKGHKGTIIIAVSVSIGIILIVIVAYFIWIKDSKPERRKKHHRIFHFHKIEKPEEQSSENVIGELSQAKLQELLLYKFEKLATATNNFHSSNKLGQGGFGPVYKGILQDGKEIAVKRLSISSGQGLKEFMNEVVVISKLQHRNLVRLLGCCTERNEKMLMYEFMPNGSLDAYIFDPSRNKLLDWEKRFSIIEGIARGLLYLHRDSRLKIIHRDLKASNILLDEEMNPKISDFGMAKIFEVSEDHANTQRIVGTYGYMAPEYAMQGVFSDKSDVFSFGVLLIEIVCGRRNSSFYEHENSLTLLGFAWTQWREGNILCLIEPEIYDDSNHKDILRCIHIGLLCVQESAVDRPTMAIVISMLNSEIMELPPARQPAFLLMQNMMHTVFSEERNEVYSNNVVSITDLRGR 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00574 832 Pfam Protein tyrosine and serine/threonine kinase 516 732 IPR001245 GO:0004672|GO:0006468
Vifa5g00574 832 PIRSF SRK 1 832 IPR024171 GO:0004674
Vifa5g00574 832 Pfam PAN-like domain 346 404 IPR003609 -
Vifa5g00574 832 Gene3D Phosphorylase Kinase; domain 1 474 589 - -
Vifa5g00574 832 CDD B_lectin 35 150 IPR001480 -
Vifa5g00574 832 Pfam D-mannose binding lectin 72 167 IPR001480 -
Vifa5g00574 832 Pfam S-locus glycoprotein domain 202 311 IPR000858 GO:0048544
Vifa5g00574 832 SUPERFAMILY Protein kinase-like (PK-like) 499 822 IPR011009 -
Vifa5g00574 832 ProSiteProfiles Bulb-type lectin domain profile. 25 147 IPR001480 -
Vifa5g00574 832 Gene3D - 24 148 IPR036426 -
Vifa5g00574 832 SMART serkin_6 514 811 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g00574 832 CDD PAN_AP_plant 343 419 - -
Vifa5g00574 832 CDD STKc_IRAK 520 786 - -
Vifa5g00574 832 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 459 589 - -
Vifa5g00574 832 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 14 776 - -
Vifa5g00574 832 SUPERFAMILY alpha-D-mannose-specific plant lectins 62 209 IPR036426 -
Vifa5g00574 832 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 590 793 - -
Vifa5g00574 832 CDD TM_EGFR-like 428 469 - -
Vifa5g00574 832 SMART blect_4 31 150 IPR001480 -
Vifa5g00574 832 ProSiteProfiles PAN/Apple domain profile. 333 419 IPR003609 -
Vifa5g00574 832 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 147 - -
Vifa5g00574 832 Gene3D Transferase(Phosphotransferase) domain 1 590 793 - -
Vifa5g00574 832 SMART ntp_6 346 418 IPR003609 -
Vifa5g00574 832 ProSitePatterns Serine/Threonine protein kinases active-site signature. 635 647 IPR008271 GO:0004672|GO:0006468
Vifa5g00574 832 ProSiteProfiles Protein kinase domain profile. 514 811 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00574 Vifa-Chr5 129774185 129777408 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00574 424 820 Receptor kinase-like Gene Family AT4G23190 47.631 1.55e-121 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa5g00574 PK_Tyr_Ser-Thr 1.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00574 - - gmx:100779455 978.778