Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00573 ATGCGTTTCTCTTTGAGATTCCAGGCTAAAAATTATACACATAGATTTGAAGGCAAAGTTGTTGGTACTTATGGTTATATGTCTCCAGAATATGCAATGCAAGGACTCTTTTCAGATAAATCTGATGTCTTTAGCTTTGGAGTATTGCTTCTTGAGATTATTAGTGGAGGACGAAATTCAAGCTTTTATAACTGCGAGAATTCTCTGACCCTTTTAGGATTCGTGTGGATACAATGGACAGAAGACAATATTTTACACAGACCAACTATGGCTGTTGTAAATTCTATGCTTAATAGTGAGATTGTAGATCTTCCTCCTCCAAAGAAACCTGCATTTGTCCTGAGGCAGAATATGCTGAGCACCGTGTCGTGTGAGGAATGCAATGATGGGTTGTATTCTATCAACTCAGTCAGTATTTCAGACATCCATGGTAGATAG 438 0.3813 MRFSLRFQAKNYTHRFEGKVVGTYGYMSPEYAMQGLFSDKSDVFSFGVLLLEIISGGRNSSFYNCENSLTLLGFVWIQWTEDNILHRPTMAVVNSMLNSEIVDLPPPKKPAFVLRQNMLSTVSCEECNDGLYSINSVSISDIHGR 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00573 145 Gene3D Transferase(Phosphotransferase) domain 1 2 103 - -
Vifa5g00573 145 Pfam Protein tyrosine and serine/threonine kinase 15 60 IPR001245 GO:0004672|GO:0006468
Vifa5g00573 145 Pfam Domain of unknown function (DUF3403) 99 145 IPR021820 GO:0004674
Vifa5g00573 145 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 11 139 - -
Vifa5g00573 145 SUPERFAMILY Protein kinase-like (PK-like) 10 126 IPR011009 -
Vifa5g00573 145 ProSiteProfiles Protein kinase domain profile. 1 145 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00573 Vifa-Chr5 129772113 129772988 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00573 9 145 Receptor kinase-like Gene Family AT4G21410 39.766 5.14e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa5g00573 DUF3403 4.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00573 - - tpra:123892371 196.823