Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00570 ATGTCAGCATCCGATAATCGTCGAGAGAAGTTTACAGGCTTGACTCTTGACGACGTCTTGGCCAAAAGGAGATTAGACACTCCGGCAACTACACCTAACCAACCACCTCCATCCAACAGTCAAACCATATTCGACATTATCAGAGAAGACGATACCAACAGAAAAGACCGTAGATCTTGGAAAGCCTTCAAGGACAAGCTTCGACTCAAGCGCGCTGGCTCCGCTTGGACATCATCAATTCATATTCCAACTTCAGATATCCCTGTACAAAATCCAAATAGTAGAAGTTTTTCTCAACTTGGGCGTCGCGACTCGGTTCGAGTACAAAGTCACCACAATTCAGACATGTCATCCCAGCCCATGACTCACCAAGTGGATGACCTCGACCCATCGGAGGGCAACAATGCTCCGGCTGCTAAACCTCAGTTCACTCGCCGCAGCTCCACCCGTTTCTCAGCTGACTCTCCGGAAAATTCTCCTGGTCGGGGAAATCTCCGGCCACAACTGTCACGGCGAAATTCCACCAATTTATCGTCGGAGCCGTTTCACCGAGGACGTGTGGTGACTTTTCGGGACAGCTTGGATGAAGATGAGCCCGACGACAACAAGAACAAAGAAGCGTGGAGGACACTTTCAGCGAGGGAGGCAGTGGCAGCACAGGAAGCGGCAGAAGCTGCAGCAGCGGAAGATACAGAGGCTTCAGGAGGGCATCCAATGATGTCACTAATGGACTTACTGGAGGAGACTGATAGAGAGATGGGATTGGAAGGGTCAAGGTATGTATTGAGTGATGATGAAGACTTTGATGATGATGATGATGAAGATGATGAAGGTGAAGATGATGATCATAGAGAAGGTGCTATGGAAGGCACTTGTTGTGTTTGCATGGTGAAGCACAAGGGTGCTGCTTTCGCACCTTGTGGCCACAGTTTCTGCAGGATGTGTTCAAGGGAGCTTATGGTGGCTAAGGGAAATTGTCCACTATGCAATAATTTCATTTCAGAGGTTCTTGAGATATTCTGA 1023 0.4858 MSASDNRREKFTGLTLDDVLAKRRLDTPATTPNQPPPSNSQTIFDIIREDDTNRKDRRSWKAFKDKLRLKRAGSAWTSSIHIPTSDIPVQNPNSRSFSQLGRRDSVRVQSHHNSDMSSQPMTHQVDDLDPSEGNNAPAAKPQFTRRSSTRFSADSPENSPGRGNLRPQLSRRNSTNLSSEPFHRGRVVTFRDSLDEDEPDDNKNKEAWRTLSAREAVAAQEAAEAAAAEDTEASGGHPMMSLMDLLEETDREMGLEGSRYVLSDDEDFDDDDDEDDEGEDDDHREGAMEGTCCVCMVKHKGAAFAPCGHSFCRMCSRELMVAKGNCPLCNNFISEVLEIF 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00570 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 266 340 IPR013083 -
Vifa5g00570 340 ProSiteProfiles Zinc finger RING-type profile. 292 330 IPR001841 -
Vifa5g00570 340 PANTHER OS01G0917900 PROTEIN 7 340 - -
Vifa5g00570 340 MobiDBLite consensus disorder prediction 137 182 - -
Vifa5g00570 340 MobiDBLite consensus disorder prediction 82 104 - -
Vifa5g00570 340 SMART ring_2 292 329 IPR001841 -
Vifa5g00570 340 SUPERFAMILY RING/U-box 291 336 - -
Vifa5g00570 340 MobiDBLite consensus disorder prediction 263 283 - -
Vifa5g00570 340 MobiDBLite consensus disorder prediction 1 24 - -
Vifa5g00570 340 Pfam Zinc finger, C3HC4 type (RING finger) 290 336 - -
Vifa5g00570 340 MobiDBLite consensus disorder prediction 1 58 - -
Vifa5g00570 340 MobiDBLite consensus disorder prediction 82 238 - -
Vifa5g00570 340 MobiDBLite consensus disorder prediction 185 210 - -
Vifa5g00570 340 MobiDBLite consensus disorder prediction 111 129 - -
Vifa5g00570 340 MobiDBLite consensus disorder prediction 259 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00570 Vifa-Chr5 129580647 129581769 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00570 1 340 C3H Transcription Factor Family AT3G07120 37.401 9.68e-62 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00570 - - gmx:100795449 388.652