Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00558 ATGGAAGAAGTTGAAAGAGAACAAGAAGAAGAGCAAGAAGCTGAAATAGATCCAGAAAATAACAATCCCCTACATCAGACACTGATCAAGAGGAACAGAACATTATCTTCAAATCCACTTGCTCTTGTTGGTGAAAAAGTTTCCTATATAGAAAGCTTAGACTATGAGATCAATGAGAATGATTTATTCAAACATGGATGGAGAAGTAGATCAAGAGTTGAAGCATTACAATACATATTCTTGAAATGGTTACTTGCATTTCTTGTTGGACTTCTCACTGGTATTATAGCAACACTTATAAATCTTGCTGTTGAGAACATTGCTGGATACAAGTTTTTGGCTGTTCTTGAATACATCAATGGAGAAAGGTACTTGACAGGTTTCCTATATTTTGCGGGAGTTAATTTTGCCTTAACATTGTTTGCTGCTATTCTGTGTGTGTGTTTTGCACCCACAGCAGCTGGACCTGGAATACCTGAAATCAAAGCTTATCTTAATGGTGTGGATACACCAAACATGTTTGGTGCTACAACATTAATAGTTAAGATAATTGGAAGCATTGGAGCTGTCTCAGCAGGCCTAGATCTTGGGAAAGAAGGACCCTTGGTACATATAGGAAGCTGCATCGCTTCCTTACTAGGCCAAGGAGGCCCTGATAATTACAGAATCAAATGGCGCTGGCTAAGATATTTCAACAATGATTGTGACCGTCGTGATCTTATTACCAGTGGCGCATCTTCAGGAGTTTGTGCAGCTTTCAGATCCCCTGTTGGTGGAGTTCTCTTTGCCCTTGAAGAGGTGGCAACCTGGTGGAGAAGTGCTCTTCTATGGAGAACCTTTTTTTGCACTGCTGTTGTGGTGGTAGTGCTTAGGGCCTTCATTGAAATCTGCAACTCCGGGAAATGTGGCCTTTTCGGTGCAGGCGGGCTGATCATGTTTGATGTTAGCAATGTCACTGTTAGGTATCATGTGATGGATATCCTACCTGTTGTAGTCATTGGAATCATTGGTGGGTTATTGGGAAGCCTTTATAATCATCTTCTACACAAGGTCCTCAGACTCTACAATCTCATCAATCAGAAAGGAAAAATACATAAACTCCTCCTAAGTCTTGCAGTAGTACTCTTCACATCCGCATGTCAATATGGTCTCCCATTCCTAGCAAAATGCACCCCTTGTGATTCATCTCTTCGAGACGCAGAATCAGTTTGCCCCACCAATGGAAGGTCCGGAAATTTCAAACAATTCAATTGCCCACCTGGCCACTACAACGATCTTGCTACTCTGCTGCTTACCACTAATGATGATGCTGTTCGGAACATATTCTCAACAAACACACCTCATGAATACCAACCCTCCTCCCTCATAATTTTCTTTGTGCTATATTGCATATTAGGACTTTTTACTTTCGGAATTGCTGTGCCGACTGGACTCTTCCTCCCAATCATCCTTATGGGCTCGGCCTACGGCCGTCTTCTTGGCATGATCATGGGACCTCATACAAAAATCGACCAAGGATTGTTTGCTGTACTTGGTGCAGCTTCCCTCATGGCTGGTTCGATGAGGATGACTGTGTCCCTTTGTGTGATCTTCCTTGAACTTACTAGCAATCTTCTCCTACTACCAATAACAATGATTGTTCTCCTAATAGCCAAAACTGTTGGAGACTGCTTCAACCCTAGCATCTATGAGATTATACTGCATTTGAAAGGCCTCCCTTTCATGGATGCAAATCCTGAGTCATGGATGAGAAACCTCACTGTTGGCGAGCTTGTAGATGTAAAGCCGGCAGTGATTTCCCTCCAAGGAGTAGAAAAGGTAGCAAAGATAGTAGATGTATTGAAAAACACTACACATAATGGTTTCCCAGTGATGGACGACGGGGTAGTGCCGCCAACAGGACAGGCCAACGGAGCAACAGAATTGCATGGACTAATTCTAAGAGCACACCTTATCCAAGCATTAAAGAAGAAGTTCTTCTTGAAAGAGAGAAGAAGAACAGAGGAATGGGAAGTGAGAGAGAAATTTACCTGGGTAGAGTTGGCCGAGAGAGAAGGGAAAATTGAAGAGGTGGCTATAACCAGAGAAGAAATGGAGATGTTTGTTGATCTACATCCTCTCACCAATACAACTCCATTTACTGTGCTAGAGAGCATATCAGTAGCAAAAGCAATGATCCTCTTCAGGCAAGTTGGACTTCGTCATCTGCTTGTAGTTCCGAAATACCAGGCATCAGGGGTATCCCCTGTTGTTGGGATTTTGACCAGACAGGATCTATTGGCTTACAACATTCTGACAGTGTTTCCTCACCTGGCAAAATCTAAAAGCAGACAGAAGAGAAATTGA 2346 0.4258 MEEVEREQEEEQEAEIDPENNNPLHQTLIKRNRTLSSNPLALVGEKVSYIESLDYEINENDLFKHGWRSRSRVEALQYIFLKWLLAFLVGLLTGIIATLINLAVENIAGYKFLAVLEYINGERYLTGFLYFAGVNFALTLFAAILCVCFAPTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVSAGLDLGKEGPLVHIGSCIASLLGQGGPDNYRIKWRWLRYFNNDCDRRDLITSGASSGVCAAFRSPVGGVLFALEEVATWWRSALLWRTFFCTAVVVVVLRAFIEICNSGKCGLFGAGGLIMFDVSNVTVRYHVMDILPVVVIGIIGGLLGSLYNHLLHKVLRLYNLINQKGKIHKLLLSLAVVLFTSACQYGLPFLAKCTPCDSSLRDAESVCPTNGRSGNFKQFNCPPGHYNDLATLLLTTNDDAVRNIFSTNTPHEYQPSSLIIFFVLYCILGLFTFGIAVPTGLFLPIILMGSAYGRLLGMIMGPHTKIDQGLFAVLGAASLMAGSMRMTVSLCVIFLELTSNLLLLPITMIVLLIAKTVGDCFNPSIYEIILHLKGLPFMDANPESWMRNLTVGELVDVKPAVISLQGVEKVAKIVDVLKNTTHNGFPVMDDGVVPPTGQANGATELHGLILRAHLIQALKKKFFLKERRRTEEWEVREKFTWVELAEREGKIEEVAITREEMEMFVDLHPLTNTTPFTVLESISVAKAMILFRQVGLRHLLVVPKYQASGVSPVVGILTRQDLLAYNILTVFPHLAKSKSRQKRN 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00558 781 Pfam CBS domain 710 762 IPR000644 -
Vifa5g00558 781 MobiDBLite consensus disorder prediction 1 17 - -
Vifa5g00558 781 PRINTS Chloride channel signature 562 576 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vifa5g00558 781 PRINTS Chloride channel signature 182 201 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vifa5g00558 781 PRINTS Chloride channel signature 151 168 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vifa5g00558 781 PRINTS Chloride channel signature 474 494 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vifa5g00558 781 PRINTS Chloride channel signature 506 522 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vifa5g00558 781 PRINTS Chloride channel signature 246 265 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vifa5g00558 781 PRINTS Chloride channel signature 524 543 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vifa5g00558 781 ProSiteProfiles CBS domain profile. 708 774 IPR000644 -
Vifa5g00558 781 Gene3D - 577 767 IPR046342 -
Vifa5g00558 781 Pfam Voltage gated chloride channel 139 555 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vifa5g00558 781 SUPERFAMILY Clc chloride channel 60 577 IPR014743 -
Vifa5g00558 781 Gene3D Clc chloride channel 74 576 - -
Vifa5g00558 781 CDD ClC_6_like 51 575 - -
Vifa5g00558 781 CDD CBS_pair_voltage-gated_CLC_euk_bac 595 762 - -
Vifa5g00558 781 SMART cbs_1 597 656 IPR000644 -
Vifa5g00558 781 SMART cbs_1 711 764 IPR000644 -
Vifa5g00558 781 PRINTS Plant CLC chloride channel signature 56 64 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vifa5g00558 781 PRINTS Plant CLC chloride channel signature 281 291 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vifa5g00558 781 PRINTS Plant CLC chloride channel signature 267 275 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vifa5g00558 781 PRINTS Plant CLC chloride channel signature 299 306 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vifa5g00558 781 PRINTS Plant CLC chloride channel signature 426 442 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vifa5g00558 781 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 8 766 - -
Vifa5g00558 781 MobiDBLite consensus disorder prediction 1 23 - -
Vifa5g00558 781 SUPERFAMILY CBS-domain pair 579 762 IPR046342 -
Vifa5g00558 781 FunFam Chloride channel ClC3 74 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00558 Vifa-Chr5 124921416 124930405 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00558 17 775 Ion Channels AT3G27170 79.842 0.0 1236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00558 K05016 - gmx:100788620 1354.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00558 5 124921416 124930405 Vifa5g00558 5 124921416 124930405 ECH