Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00554 ATGGGAAGGAATTCTTCATTGCAATTCATTATCTGCATCTATATGTTGTACTTGTTGGCATGGTCAAGAGTGCAAACAAGCCACTCCTTTGTGCTACAAAGAACTACTATTATGAGCATAGGTGCTGTGCTTGATTTGGCTTCATTAATGGGAAAACAACAGAAGATAGCAATGGAAATTGCAGTAGAAGAGATCAACATTGACCAATTCAGTTCTTCCAAGATAGATTTGAAGATAAAAAACTCTCATGGAAATTCTGCTCAAGTAATTGCAAGTGTTATGAATCTCTCACAGAGCAACCAAGTGCAAGCCATCATAGGAACTGTTACACACAACGAAGCAAGACTTGCAAGTGAATTCAGTGACACCATAAACACAATTCCCATCATGTCTCTAACTTCATTTTCAGCCAGACCAGAATTATTATCTCCTAGATTGCCACATTTCATCCAAGTAGGAGATGGTATTAACCTTCACATGCAATGCATATCAGCAATTGTAGGAGAATTCAGATGGAAAAAGGTGACAGTTATTTATGAACTTAATAATGACTTTTCATCTGATCCAGGGATACTACTTAGCCTCTCTTATTCTCTTAAACTAGTTGGTTCTGATATTGTTAACCATTTAGCTTTTCCTTCCTTATCCACTCTTTCAAACCCAAAAACTACAATTGAAAATGAGCTTAATAAGCTGGAAAAAAAGAGTAATAGGGTCTACTTGATTGTTCATTCTTCTTTAGAGTTGGCTAACATGCTTTGTGAGAAAGCAAAGCAAATAGGTTTGATGGAAAAAGGTTCTGTGTGGATTATCCCAAATGAAGTCGCCGGTCTTCTTGATTCGGTTAACTCTTTTGTTATCTTCAACATGCAAGGCGTTCTTGGATTTAAAACACACTTCGTTGAAAAGAGTGAGGCTTTTAGAAAGTTTAAGTTCAAATTCCAGAAAAAGATTGCTCTGGAATACCCTGAAGAAGATAACATAAATCCAAGTATCTTTGCACTTCAAGCATATGATGCAACTAAGGTTATTGCTAAGGTTGCAAATAAATCATCACAGGGAAAATTCAGTCTTACAGAATTCTTGAAGAATGGACAATTGTTTCAATCACCAACTTTCAACATAATTAATGTGATTGGGAAAAGTTATAGAGAAATGGCATCTTGGTCCCCAGCACTTGGTTTTTCCAAGAACATTGTTAGCCATAACAAGGTAATGGAGATAAGCACAAACAATGATGATTCAAATGGAGTTTTCAAAACAGTTTATTGGCCGGGAGAAATGCAATCAGTTCCTAAGGGTCATAATGGTGAGGAAAGGTCGTTGAAAATAGCAATACCTTCAAATGGTGCTTTTACTCAGTTTGTGAATGTGGAATATGATCATGGAAACAATGAACCTAAAGTCACTGGTTTCTCAGTCAGTATCTTTAAAGCAGCTGTCAAGCGTTTACCTTATGTTTTAAATTACAAGTTTTTTCCCTTCAATGGATCATATGATGAAATGGTTGATCATGTCTACAATAAGACATTGGATGCTGCGGTTGGTGATACGTCAATAGTGGCATATAGATATCATTTAGTGGAATTCTCACAACCTTATATTGAATCTGGCCTACACATGGTGGTTACTGAACAACCAGCAAAATCAAAAGAAACATGGATGTTTTTGGCTGCCTTTACAAAAGAGATGTGGTTGATGATGACAGCTATGCATGTTTTTGTGGGATTTGTTACTTGGTTGATTGAAAGGGAAGTAAATGAAGATCTAAGGGGATTTGGGTCCATGCTTTGGTTTTTAGTTACTATTCTATTTTACGCAAACAATGAACCAATAAGAAGACCCTTAGCTCAAATTGTACTTACACCATGGTTGTTTGCTATTTTCATTGTGGCAAATAGTTTCACGGCAAGTTTGACATCTATAACTATTTCACAAGTAAAGCCATCTGTGTTAGATATACAGACCCTTAAAGATAGAAATTCTCCAATTGGTTGTGATGGAAATTCCTTTATTGTCAAGTATTTAACTGAAGTGCTAAATTTCAAGTCTGAGAACATAAGGAAATTAAATTCCATGAGTGACTACCCTGCTGCCTTTGATAACAAGGAAATAGAAGCCGCCTTCTTCGTCGCGCCTCATGCTAAAGTCTTTCTAGCAAAGTACTCGTGTAAGGGATTTATCAAAGCAGGGAACACTTACAGGCTTGGTGGCTTTGGTTTTGTGTTTCCAAAAGGTTCAAGTCTAGCTACCGACATATCAGAGGCGTTGCTGAGTATGATAGAGAGTGGAGAAACAGAACAACTAGAAAAAGAAATGTTGAATGAGATAGAAAATGAAGGCAAAGCAAATTGTTCTTCTTTAGAGAACAACAAGGGGAAAAATAATTCATCAATAGGCCTTCCGCCTTACCTTGGTTTGTTTTCGATCTGTTCTACTATTGCTATTCTTGGTTTGTCATATTACATGATTTGCTGGTTAGTGAAGAATGTAGAAACTTTGACAAGCCACGCAGTTTTAACATTAACACAATTATGGAGAATATGGAGATGGACAACCAATATTTTTGCTTGGTGCTGTTCAAAACTTCAATCAAGGATCATGAGTAGAGTAAGCAGCTGCACAGAAACAAGAAATGCAGAAGAGAATGCCGCTAATAGCCAGCAAATCCCAGTGGTGGTTGAGCTTGTTGATACTGTACTGGCTGCTCATGCTTCATGA 2721 0.3697 MGRNSSLQFIICIYMLYLLAWSRVQTSHSFVLQRTTIMSIGAVLDLASLMGKQQKIAMEIAVEEINIDQFSSSKIDLKIKNSHGNSAQVIASVMNLSQSNQVQAIIGTVTHNEARLASEFSDTINTIPIMSLTSFSARPELLSPRLPHFIQVGDGINLHMQCISAIVGEFRWKKVTVIYELNNDFSSDPGILLSLSYSLKLVGSDIVNHLAFPSLSTLSNPKTTIENELNKLEKKSNRVYLIVHSSLELANMLCEKAKQIGLMEKGSVWIIPNEVAGLLDSVNSFVIFNMQGVLGFKTHFVEKSEAFRKFKFKFQKKIALEYPEEDNINPSIFALQAYDATKVIAKVANKSSQGKFSLTEFLKNGQLFQSPTFNIINVIGKSYREMASWSPALGFSKNIVSHNKVMEISTNNDDSNGVFKTVYWPGEMQSVPKGHNGEERSLKIAIPSNGAFTQFVNVEYDHGNNEPKVTGFSVSIFKAAVKRLPYVLNYKFFPFNGSYDEMVDHVYNKTLDAAVGDTSIVAYRYHLVEFSQPYIESGLHMVVTEQPAKSKETWMFLAAFTKEMWLMMTAMHVFVGFVTWLIEREVNEDLRGFGSMLWFLVTILFYANNEPIRRPLAQIVLTPWLFAIFIVANSFTASLTSITISQVKPSVLDIQTLKDRNSPIGCDGNSFIVKYLTEVLNFKSENIRKLNSMSDYPAAFDNKEIEAAFFVAPHAKVFLAKYSCKGFIKAGNTYRLGGFGFVFPKGSSLATDISEALLSMIESGETEQLEKEMLNEIENEGKANCSSLENNKGKNNSSIGLPPYLGLFSICSTIAILGLSYYMICWLVKNVETLTSHAVLTLTQLWRIWRWTTNIFAWCCSKLQSRIMSRVSSCTETRNAEENAANSQQIPVVVELVDTVLAAHAS 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00554 906 CDD GluR_Plant 442 774 - -
Vifa5g00554 906 Gene3D - 738 771 - -
Vifa5g00554 906 PIRSF IGluLR_plant 4 366 IPR017103 -
Vifa5g00554 906 PIRSF IGluLR_plant 351 892 IPR017103 -
Vifa5g00554 906 Gene3D - 435 561 - -
Vifa5g00554 906 FunFam Glutamate receptor 553 685 - -
Vifa5g00554 906 Gene3D - 648 737 - -
Vifa5g00554 906 Pfam Bacterial extracellular solute-binding proteins, family 3 465 772 IPR001638 -
Vifa5g00554 906 SUPERFAMILY Periplasmic binding protein-like I 39 434 IPR028082 -
Vifa5g00554 906 SUPERFAMILY Periplasmic binding protein-like II 439 771 - -
Vifa5g00554 906 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 39 861 IPR015683 -
Vifa5g00554 906 FunFam Glutamate receptor 437 552 - -
Vifa5g00554 906 Pfam Receptor family ligand binding region 55 355 IPR001828 -
Vifa5g00554 906 Gene3D - 156 330 - -
Vifa5g00554 906 Pfam Ligand-gated ion channel 773 811 IPR001320 GO:0015276|GO:0016020
Vifa5g00554 906 Gene3D - 33 155 - -
Vifa5g00554 906 SMART GluR_14 441 776 IPR001320 GO:0015276|GO:0016020
Vifa5g00554 906 FunFam Glutamate receptor 159 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00554 Vifa-Chr5 124274076 124289572 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00554 4 856 Ion Channels AT2G29100 28.918 1.04e-105 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00554 - - mtr:11432453 1336.24