Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00553 ATGGATCCAAAAAGCGGGTTCAACTCCGTATCCAGAACCTTCCACAGTCTACGTCCCTCACTCAACCTTCCTCCACCACACACCACAATCTCAACCGCAACCTACATTCTCTCCCTCCGCCACAAATCACCTTCCCCCGACTCACTCACTTTTCTCATCGACTCAACCACATCCTACCGAATCTCTCACTCCAACTTTATCCAACGCTCACAAACCCTCGCCACCAACCTCATCACTCTCCACGGACTCACCAAAAACCACACCGCATTGGTACTTTCCCCAAACATTATCCAGGTACCAATCCTCTACTTCGCACTACTCTCCATTGGCGTGGTCGTTTCACCCGTAAATCCAGCTTCTACCCCCTCCGAGATTTCTCACCTCATAAACCTCTCAAAACCGATCATCGCTTTTACGACCTCGTTTTCATTTCACAATCTTCCAAAACTCCCACTCGGAATGATTCTCATTGACTCGCCCGAGTTCGACTCACTCACCATGGAAGGTAGTACTTCGCCGGTGTCCCCGGTTGTTAATCAGTCCGACGTGGCTGCGATTCTGTACTCCTCGGGGACCACGGGGAAATCAAAAGGCGTAATGCTTACTCACCGGAACATTATGGCGTCGGTGGCGGCGTACGACGCGGTTCGTATTCCCACGGAGAGTCCCGCCGTGTGTTTGCCCATGGTGCCTTATTTTCACGTGTATGGTTTTACCTACCTTTTGAAGTCAGTGGCAATGTTGGAAACGTTGGTTGTGATGGAGAGGTTTGGATTGGAGAAAATGCTGGCTGCTTTGCGAAGGTTTCGAGTTACTCATCTTGTGGTGGCGCCGCCAGTAGTGGTGGCCATGAGTAAAGAGAGAGCGACGGAGGGGTATGATTTGTCGTCATTGAAATGGGTGGCTTGTGGTGGTGCTCCGTTGGGTAAAGACAACTTCGATGCTTTCAAAGCAAAGTTCCCTCTAGTATCCATCCTCCAGGGATATGGGTTAACCGAATCAACCGCCGGTGTTATCCGATTAGTAGGTCCAGATGAGGATAGCCGAGCAGGTACTACAGGTAGGCTGGTATCAGGGATGGAAGCTAAAATAGTGAACCCCAACACAGGAGATTCCTTGTCTCCTGGTGTACAAGGAGAACTTTGGGTTAGAGGACCTCCAGTAATGAAAGGTTATGTTGATGACCCGGTGGCAACTGCTGTTACTTTGGTGGATGGATGGTTGAAAACTGGCGATATTTGCTATTTTGACAATGAAGGTTTCGTCTATGTTGTAGACAGGTTAAAAGAATTGATCAAATATAAAGGTTATCAGGTGGCTCCTGCAGAGCTGGAACAACTACTCCAGTCTCACCCAGAGATAAAAGATGCTGCAGTTGTTCCATACCCTGATGAAGATGCTGGCCAGGTTCCCCTGGCTTTTGTGGTAAGACAACCTCAAAGCTCCATGGGTGAAGCAGAAATAATAGATTTTGTAGCCAAACAGGTTGCACCATACAAGAAGATAAGGCGTGTGGTATTTGTCCATTCCATACCTAAGAATGCAGCAGGAAAGATACTGAGGAAGGACTTGTTGAATAAAATTATCGCTAAAGAAACATTTCCTAGGTTATAA 1614 0.4789 MDPKSGFNSVSRTFHSLRPSLNLPPPHTTISTATYILSLRHKSPSPDSLTFLIDSTTSYRISHSNFIQRSQTLATNLITLHGLTKNHTALVLSPNIIQVPILYFALLSIGVVVSPVNPASTPSEISHLINLSKPIIAFTTSFSFHNLPKLPLGMILIDSPEFDSLTMEGSTSPVSPVVNQSDVAAILYSSGTTGKSKGVMLTHRNIMASVAAYDAVRIPTESPAVCLPMVPYFHVYGFTYLLKSVAMLETLVVMERFGLEKMLAALRRFRVTHLVVAPPVVVAMSKERATEGYDLSSLKWVACGGAPLGKDNFDAFKAKFPLVSILQGYGLTESTAGVIRLVGPDEDSRAGTTGRLVSGMEAKIVNPNTGDSLSPGVQGELWVRGPPVMKGYVDDPVATAVTLVDGWLKTGDICYFDNEGFVYVVDRLKELIKYKGYQVAPAELEQLLQSHPEIKDAAVVPYPDEDAGQVPLAFVVRQPQSSMGEAEIIDFVAKQVAPYKKIRRVVFVHSIPKNAAGKILRKDLLNKIIAKETFPRL 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00553 537 Gene3D - 430 531 IPR045851 -
Vifa5g00553 537 Gene3D - 17 429 IPR042099 -
Vifa5g00553 537 SUPERFAMILY Acetyl-CoA synthetase-like 46 527 - -
Vifa5g00553 537 ProSitePatterns Putative AMP-binding domain signature. 186 197 IPR020845 -
Vifa5g00553 537 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 526 - -
Vifa5g00553 537 Pfam AMP-binding enzyme C-terminal domain 443 518 IPR025110 -
Vifa5g00553 537 FunFam 4-coumarate--CoA ligase 2 430 531 - -
Vifa5g00553 537 Pfam AMP-binding enzyme 50 434 IPR000873 -
Vifa5g00553 537 CDD 4CL 24 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00553 Vifa-Chr5 124058475 124062046 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00553 1 524 Monolignol Biosynthesis Gene Families AT5G63380 51.296 0.0 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00553 K01904 - gmx:100801143 665.225