Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00552 ATGAATGACTTCATTATGCACACGTTAAAGGAAGAAGTCCATGGAAAGCTATTGCCATTAATGGATTCATTGTGTATAGAGAACAAAGAGGTTGACTTGCAGGAATTGTTGGGGAGATTCTCTTTCAATGTGATTTGCAAATTTACAATGGGGAGTAATGACGGCGATGATGAGAATAATAGGTGTTGTTTGAATCCTAGTTTTCCGATTTCGCCGTTAGCAAAGGCTTTCGATGTGGCGGCTGAGATTTCGGCGAGGCGTGGAGCAGCGCCGTTGTTTTTGGTGTGGAGAGTGAAGAAATGGCTGAGAGTTGGATCGGAAAGGAGGTTGAGAGAGGCGGTTAAGGAGGTTCAGACACGTGTCATGGAAATGATTTTAAATAGAAAGAAAAAGATGAGTGTAATGGGAGAGGAATTTCTTGGTGGTCAAGATCTCTTGTCACGTCTTATTTATTCAGATCATGATGAGGAAGTGATTAGGGACATGGTGATAAGCTTGATTATGGCAGGGAGAGACACAACATCATCAGCTTTAACATGGTTCTTTTGGTTACTATCAAGTCATTCTGAGATTGAGCACATGATAGTGAAAGAGACATTGAATTATGATTATGATTATGACTATGAATCATTGAAGAATATGAATTATTTAAAGGCATGTCTATGTGAAGCAATGAGATTATACCCACCAGTGGCATGGGATTCAAAGCATGCCACATGTGATGATATATTGCCATATGGCACAATGGTAAGAAGTGGAGATAGAGTGACCTATTTTCCATATAGAATGGGGAGATTGGAGAATTTATGGGGAAAAGATTGGTTTGAATTTAGACCGGATCGGTGGTTTATTGAGCCGGTTGACCCGGGGGAGAATGAAGTAGTGTTGAAAGAGGTTTGTCCTTTTAAGTTTCCTATTTTTCAGGGTGGTCCAAGGGTGTGTTTGGGAAAAGAAATGGCTTTTGTTGAAATGAAATATGTCGTGGCTTCAATTGTTAGGAGATTTAAGATTAGAATAGTTAGTAGTGAGAAGCCTATATTTGTGCCTCTTCTTACGGCGCACATGGCTGGCAGCTTAAAAGGATTGGTTTCTAAAAGGGTGTGA 1104 0.4022 MNDFIMHTLKEEVHGKLLPLMDSLCIENKEVDLQELLGRFSFNVICKFTMGSNDGDDENNRCCLNPSFPISPLAKAFDVAAEISARRGAAPLFLVWRVKKWLRVGSERRLREAVKEVQTRVMEMILNRKKKMSVMGEEFLGGQDLLSRLIYSDHDEEVIRDMVISLIMAGRDTTSSALTWFFWLLSSHSEIEHMIVKETLNYDYDYDYESLKNMNYLKACLCEAMRLYPPVAWDSKHATCDDILPYGTMVRSGDRVTYFPYRMGRLENLWGKDWFEFRPDRWFIEPVDPGENEVVLKEVCPFKFPIFQGGPRVCLGKEMAFVEMKYVVASIVRRFKIRIVSSEKPIFVPLLTAHMAGSLKGLVSKRV 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00552 367 SUPERFAMILY Cytochrome P450 11 366 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa5g00552 367 Gene3D Cytochrome P450 3 364 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa5g00552 367 PRINTS E-class P450 group I signature 178 204 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa5g00552 367 PRINTS E-class P450 group I signature 304 314 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa5g00552 367 PRINTS E-class P450 group I signature 40 58 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa5g00552 367 PRINTS E-class P450 group I signature 158 175 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa5g00552 367 PRINTS E-class P450 group I signature 314 337 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa5g00552 367 PANTHER CYTOCHROME P450 2 359 - -
Vifa5g00552 367 Pfam Cytochrome P450 11 345 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa5g00552 367 PRINTS P450 superfamily signature 219 230 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa5g00552 367 PRINTS P450 superfamily signature 305 314 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa5g00552 367 PRINTS P450 superfamily signature 314 325 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa5g00552 367 PRINTS P450 superfamily signature 169 186 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00552 Vifa-Chr5 123730799 123732039 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00552 1 366 Cytochrome P450 AT5G63450 54.768 1.10e-138 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00552 K20665 - gmx:100786130 496.508