Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00550 ATGCTTCCTCTGATGGCAAATGGTTCATGGATGTCACTTGGTAGCATTCATAATGGAAAAACCAATCATAGAAATGGTCTCACTGCGTTGGACTTAAAGGGGACGAATTGTGTTGGTCTTCTTTCTGAAGTGTTTGCGGCAGTTAGAGCAGAGGCAAGAATAACGGCAGTGTGGCTTCTGAAGATTAAATTGGGACAGAGTGCAACAAAACCTGTTAACTCGCTTTCAGGGACCGAGACCTCTTCCAATTCAGGCATAAGCATATGTGCTTTGGTTGACATAATCTTAGGCTCAATTGCATGTGTAATTTCATTGTCTGCAATTTTTATTCTTTTACTATTAATAATAAGATTAAGACGTCATGATGCAATTTCCAAACCCCACCATTCATCTAAGATCGCAATACAAATTGATGGCACAAGAGCTTTTACTTATGAGGAGTTGTCTGCTGCTACCAGCAATTTTGACAACAATGCTCAAATTGGACAAAGAGGTTATAAGAAGGTTTATAAAGGTATTCCTTCTAATGGCATTATGGTGGCCATAAAACATGCACATCAAGGATCACTGCGAGGTGAGAAGGAATTTCTCACAGAAATTAGAACACTATCAACGATACATCATCGCAAACTTGTGTCTTTGATTGGATACCGTGATAAAGAAGGTGAACAGTTACATCAGAAAAACCTTTGA 693 0.3896 MLPLMANGSWMSLGSIHNGKTNHRNGLTALDLKGTNCVGLLSEVFAAVRAEARITAVWLLKIKLGQSATKPVNSLSGTETSSNSGISICALVDIILGSIACVISLSAIFILLLLIIRLRRHDAISKPHHSSKIAIQIDGTRAFTYEELSAATSNFDNNAQIGQRGYKKVYKGIPSNGIMVAIKHAHQGSLRGEKEFLTEIRTLSTIHHRKLVSLIGYRDKEGEQLHQKNL 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00550 230 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 76 224 - -
Vifa5g00550 230 SUPERFAMILY Protein kinase-like (PK-like) 129 222 IPR011009 -
Vifa5g00550 230 Gene3D Phosphorylase Kinase; domain 1 125 226 - -
Vifa5g00550 230 ProSiteProfiles Protein kinase domain profile. 155 230 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00550 Vifa-Chr5 123629560 123634998 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00550 84 225 Receptor kinase-like Gene Family AT5G37450 44.521 2.82e-31 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Vifa5g00550 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00550 - - gmx:100786467 166.392