Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00542 ATGGCATCATCTTCAAGCTTGTACTCAAATTCACCATGTGCTGCGTGCAAGTTTTTGAGAAGGAAGTGCATGCCAGATTGCATATTTGCTCCATATTTCCCACCAGATGAACCACAGAAATTTGCAAACGTTCACAAAATATTTGGTGCAAGCAATGTGAGTAAACTTCTGAATGAAGTTCAACCTCATCAAAGAGAAGATGCTGTCAACTCTCTTGCCTATGAAGCCGAGGCAAGGATTAAAGATCCTGTTTATGGTTGTGTTGGTGCTATTTCAGTCCTCCAAAGACAAGTTATTAGTCTCCAAAAGGAACTCGATTCTACTAATGCTGATTTGATTCGTTATAATGAAATATTGCCAAATCATGGAGAACTTTCTTCTCCTCCACCTCCTCCAACTTTTTACTTTCCTTCACCTTGGAACAATAATGATCCACTTGGGGATGCTTATCACACAGGTGGAGGTGACAATATATAA 477 0.3962 MASSSSLYSNSPCAACKFLRRKCMPDCIFAPYFPPDEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVISLQKELDSTNADLIRYNEILPNHGELSSPPPPPTFYFPSPWNNNDPLGDAYHTGGGDNI 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00542 158 Coils Coil 91 111 - -
Vifa5g00542 158 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 10 117 - -
Vifa5g00542 158 ProSiteProfiles LOB domain profile. 11 112 IPR004883 -
Vifa5g00542 158 Pfam Lateral organ boundaries (LOB) domain 12 109 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00542 Vifa-Chr5 121953274 121953750 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00542 8 127 AS2 family AT3G27650 79.167 2.44e-68 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vifa5g00542 LOB 7.5e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00542 - - gmx:100306630 248.054