Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00501 ATGCAAAAAGGCATAGCAGTAACCTCTCTCTCATCTTCTATACTTTTTTTCGCTATTCCTATTATTGCCACAACCATTCCTCCCTTTATCTCATCTCAATTCCAACAGACTCACCTCTTCTTTCACCCATCTCAATTCCAGCATACTCCCTCTCTTCACACAACCCATCATCCTCCACGGTCCGCCGCTTGCAACCTTCCGCCGGTACCTTTCCAAACAAAAGGGATAAACAAAACCGTCGATCCAATCAACGATAGCAAGTACGAACATATACTCGAAAGTTTCGCCGAGAAACTAGTGAAAGAGAGGCCTTCGCTTTCATTTGTCATGGCTGCTTCAAACAGTTCTTATCTTCATAACGATGCACAAACAGCAACACCGGGATTGCTTCCTTCATGGCTTTCGAATTCCAACAATACAGCACCTGTTAGGCCGAATTCTCCTTCAGTGACATTAAGTCTCTCTCCCTCGACAGTTGCAGCACCTCCTCCGTGGATGCAGCCTGTACGAGGACCGGACAATGCGCCTCTTGTTCTTGGGAATGTTGCTCCTCACGGCGCGGTTCTGTCTTATGGCGAAAACATGGTGATGTCTGAGTTAGTAGATTGCTGTAAGGAGTTGGAAGAAGGTTATCATGCATTGGCAGCGCATAAGAAAGAGGCAGCATGGAGGTTAAGCTGA 681 0.4655 MQKGIAVTSLSSSILFFAIPIIATTIPPFISSQFQQTHLFFHPSQFQHTPSLHTTHHPPRSAACNLPPVPFQTKGINKTVDPINDSKYEHILESFAEKLVKERPSLSFVMAASNSSYLHNDAQTATPGLLPSWLSNSNNTAPVRPNSPSVTLSLSPSTVAAPPPWMQPVRGPDNAPLVLGNVAPHGAVLSYGENMVMSELVDCCKELEEGYHALAAHKKEAAWRLS 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00501 226 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 78 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00501 Vifa-Chr5 117278798 117279665 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00501 72 225 MYB Transcription Factor Family AT2G37630 49.133 1.30e-35 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00501 K09422 - gmx:100819082 249.21