LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa5g00497	ATGGAACCACCACAGGAGATTTCAGGAGGAGGAGGAGCAGAAACACTTAAAAATATGCCTCCTGGATCTTCGATTTCTATTGCATATCACCCGAATTTTGGACCTCATGATGATCTCATTGTTCTAGAGCTCGATGAGAAACTGATCCCGGATGTTTTGAATGAAAGGATGGTCTTAAGAGGACAGCCTGACGAGGATGCGGTTCTTTGTACTCAATCAAAAACATATGCTATGAAATTTGTTGGAACTTCCAATTCTGTTTTGCTTGTACCACCAGAAAATCAATCAGAATCGTATGAAAATCAGCAGAAGAATGATATTAACAATACTGACGAGAAAGCTGTTGCACGTATAATAAAAGTCGTACCTGGTAGTTTGGAGCTTATTGAGGTGTCCCCCAAACTTGATAAACTCAAATTGCTTCTTTCAGAGAACACTTACAAATTTGATGAAAATGACATGGAAATTTTAGAAGAGAATCAGGAATCAAGAGTGGGATTATATAACTGGAATGATCTTATAGACAATATTCAAGCTAGTGACGAGGAATTAAGATTTGGATTGCAGGCTCTTTCTGCCGTGGAGATTAATGGGTATTGGAGATTAGTTGATGAGAGTTACATGGACATGATTCTGGGAGTGCTTTTGAAAAATTCAGTGTTGAATGACCGGTCACTCAATGCTCTAAATGAAGATGAAGTTGTGAATATGCTGGAATCAGACGGGTTTCCGATGGTTCTTGCAAGGCATTGCTTGCACTTATATGCCAACCAAGTAAAAGAAAATGATTCCATGGAAAGCTGTGTGTGGAAGTTGGATGAGAAGCGGGTATGCATACACTATGCAAGAGAAATCCTAAAAGGAGGTAAGAGGAAGTTAGAGAGTTTTATGGAAGAATGGAGGAAGAAGACTCCAGATAAAATGCAGCCATCTTTTGATCTTATGGAAGGAGAGGTATTGACAGAGAAACTTGGAGTTGAGACATGGGTTCGTGCCTTCCGTGTCTCTTCTTTGCCTTCCACTCCAGCTGAGCGTTTCTCCATTCTTTTCAGAGAGCGTGCAAAATGGGATTGGAAAGATCTGCAGCCCTATATCAGGGATCTGAATGTACCAGGTCTTTCTGCTGAAGGTTTACTACTCAAATACACTCGAAAGACACAACCGTCACCTAATCAAGATCCAGTTTTCAGTGCAAGATAA	1200	0.4033	MEPPQEISGGGGAETLKNMPPGSSISIAYHPNFGPHDDLIVLELDEKLIPDVLNERMVLRGQPDEDAVLCTQSKTYAMKFVGTSNSVLLVPPENQSESYENQQKNDINNTDEKAVARIIKVVPGSLELIEVSPKLDKLKLLLSENTYKFDENDMEILEENQESRVGLYNWNDLIDNIQASDEELRFGLQALSAVEINGYWRLVDESYMDMILGVLLKNSVLNDRSLNALNEDEVVNMLESDGFPMVLARHCLHLYANQVKENDSMESCVWKLDEKRVCIHYAREILKGGKRKLESFMEEWRKKTPDKMQPSFDLMEGEVLTEKLGVETWVRAFRVSSLPSTPAERFSILFRERAKWDWKDLQPYIRDLNVPGLSAEGLLLKYTRKTQPSPNQDPVFSAR	399

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa5g00497	399	Pfam	Sister chromatid cohesion protein Dcc1	41	365	IPR019128	GO:0007064\|GO:0031390
	Vifa5g00497	399	PANTHER	SISTER CHROMATID COHESION PROTEIN DCC1-RELATED	13	399	IPR019128	GO:0007064\|GO:0031390

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa5g00497	11	399	C3H Transcription Factor Family	AT2G44580	54.177	1.86e-154	439

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa5g00497	K11271		-	gmx:100817511	622.468