Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00496 ATGACAATAAAATATTGTTACAAAGATTTGGTTCCTTTTGGTGCCATGGTAACCATGGAATGCATCAACGTTGCTTTGAACACTCTCTTCAAAGCTGCTACCTTAAAAGGAATGAGTTACCATGTTTTTGTAGTTTATGCTTACGCTGTTGCTGCTTTTGTTCTTCTTCCTTCACCCTTTTTCTCCAAAAGATCAAGAGTTCTTCCTCCTTTGAGTAAACCTATATTATACAAAATTGGTCTTCTTGGGTTGATAGGAAGTTCATCTCAGATAATGGGTTATACAGGTATTAGTTTGAGTTCTCCAACTCTTTCATCAGCTATCAGCAACTTGGTGCCAGCTTTTACCTTCTTGCTTGCCATCATTTTCAGGATGGAAAAAGTAGCCATAAGAAGTCCAAGTAGTCAAGCCAAAGTGTTGGGGACCATAGTGTCTATATCAGGAGCATTTATAGTTACACTTTACATAGGACCGCCAATCATCATTGCTCTTAGACATTCACTTTCACTTCATCTTACTCTTAAATCTTCAGATCAAAGTTGGGCCATTGGTGGCCTTCTACTTACAGCTGAGTACATATTGGTTCCTATGTGGTACATCGTACAGGTTCAAATTATGAAGGTGTACCCAGATGAACTAACAGTGATCTTCTATTACAACTTAAGTGTGAGCATTATTGCTGCAATTGTAGGAGTGATAAGTGAGCCAAATGCAAGTGCTTGGAAAATAGGATTTGATATATCACTTGCTTCCATCCTTTGCTCGGGATTTTTTGGATCATTCTTGAACAATACAGTTCACGCATATGTACTGCGTATAAAGGGGGCAGTATATGTTGCAATGTTCAAACCACTCTCAATTGTCATAGCTTGTGCCATGGGAGTAGTGTTCCTTGGTGATACTCTCCATCTTGGAAGTTTAGTTGGAGCCACAATAATATCAATTGGGTTTTATACTGTAATGTGGGGTAAAGCGACAGAAGAAGAGGTGGTTGAAGATGTCCCTAGCCACGAAACACCGGCTACACAGAATGTTCCTCTCTTGCAAAACTATGAAACCAATAGAGTTGAAAAGAAAATGGATGCAATTGTATAA 1095 0.389 MTIKYCYKDLVPFGAMVTMECINVALNTLFKAATLKGMSYHVFVVYAYAVAAFVLLPSPFFSKRSRVLPPLSKPILYKIGLLGLIGSSSQIMGYTGISLSSPTLSSAISNLVPAFTFLLAIIFRMEKVAIRSPSSQAKVLGTIVSISGAFIVTLYIGPPIIIALRHSLSLHLTLKSSDQSWAIGGLLLTAEYILVPMWYIVQVQIMKVYPDELTVIFYYNLSVSIIAAIVGVISEPNASAWKIGFDISLASILCSGFFGSFLNNTVHAYVLRIKGAVYVAMFKPLSIVIACAMGVVFLGDTLHLGSLVGATIISIGFYTVMWGKATEEEVVEDVPSHETPATQNVPLLQNYETNRVEKKMDAIV 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00496 364 PANTHER WAT1-RELATED PROTEIN 9 336 IPR030184 GO:0016020|GO:0022857
Vifa5g00496 364 SUPERFAMILY Multidrug resistance efflux transporter EmrE 48 154 - -
Vifa5g00496 364 SUPERFAMILY Multidrug resistance efflux transporter EmrE 238 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00496 Vifa-Chr5 116608462 116611658 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00496 1 355 Nodulin-like Gene Family AT3G28050 57.493 1.91e-138 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00496 - - gmx:100814137 515.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00496 5 116608462 116611658 Vifa5g00496 5 116608462 116611658 ECH
Vifa1g04733 1 740579079 740580017 Vifa5g00496 5 116608462 116611658 ECH
Vifa2g01769 2 456647210 456649588 Vifa5g00496 5 116608462 116611658 ECH