Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00488 ATGGTGGGAATCAATAAACTTGAGGATCTAAGATTGCAACAATTTGACACGATGATACCGAAGCTATCACCAAATCAAGCGGAATTCCTACTTCGGTTCCACAGAGATCTTCAACGGGTGCGAATTGACACTGATTTGTGTTCGGGCGATGCCATCAAGTGCATTCAGCGTTGTTCAAATGAGACTGTCGCTATCAAGATTCTAACCATTCCTCAGGAACAGAAACACAACGGAATTCCATCCACCATTTTGAATCACGTCTCTATCCTCAAAGGTTTAAACCATCCCAATATCGTCAGGTTGTTTCAAATTCTGGCTACTGAGGAAGATGTGTATCTTGTTTTTGATCATGTTAACCTAAATCTTGAAAGATACATCACCAATCCCATGATTAGCATTGCCACATTTGAAACATCTATTCTAAGTCAAGCTCTTTCTGGATTGGCATACCTCCACTCTCACAACATTCTACACACTGATATCAATCCTTTTAATGTTCTCATTGAATACCACCCAGATGAATCTCCTGTAGTGAAGCTATGTGGTATTCGTGCCCCCAAAACTTCTCTTCATGCTCATCCTAGCTATACAGCACCTGAACTTTTGATGGGCTCAACCAATTACTCAACTGCAGCTGATATCTGGTCTATGGGCTGCATATTTGCTCGCATCATTAAGCGCCAACCTCTCTTCAATGATATAGACAAGCTTAGGGTATTGGCTGAGATTTTTTGTTTGTTTGGTACACCAACAGAACAAACTTGGCCTGGCGTCTCTTCTATATGCAATTTTATTCAAGCATTTAACCCTCCAATACAGCCAAAGGACCTAGCTGAAGAGTTCCCAAGCCTCGAACCTGATGGTCTTGATCTTCTTTCGAAAATGCTTTGCCTGTGCCCAAATGGCAGGATTTCAGCTTATGAAGCTCTTGACCATCCATATCTTCGCCTGCGCCCGCGCCCAAATGGCAGGATTTTTCTTCACCGTCCATGCCTTCGACATTGA 1005 0.4259 MVGINKLEDLRLQQFDTMIPKLSPNQAEFLLRFHRDLQRVRIDTDLCSGDAIKCIQRCSNETVAIKILTIPQEQKHNGIPSTILNHVSILKGLNHPNIVRLFQILATEEDVYLVFDHVNLNLERYITNPMISIATFETSILSQALSGLAYLHSHNILHTDINPFNVLIEYHPDESPVVKLCGIRAPKTSLHAHPSYTAPELLMGSTNYSTAADIWSMGCIFARIIKRQPLFNDIDKLRVLAEIFCLFGTPTEQTWPGVSSICNFIQAFNPPIQPKDLAEEFPSLEPDGLDLLSKMLCLCPNGRISAYEALDHPYLRLRPRPNGRIFLHRPCLRH 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00488 334 Pfam Protein kinase domain 49 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g00488 334 SUPERFAMILY Protein kinase-like (PK-like) 49 316 IPR011009 -
Vifa5g00488 334 Gene3D Transferase(Phosphotransferase) domain 1 138 322 - -
Vifa5g00488 334 ProSiteProfiles Protein kinase domain profile. 37 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g00488 334 PANTHER CELL DIVISION PROTEIN KINASE 49 316 - -
Vifa5g00488 334 Gene3D Phosphorylase Kinase; domain 1 53 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00488 Vifa-Chr5 113536443 113538110 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00488 49 316 Core Cell Cycle Gene Families AT3G48750 40.357 2.01e-63 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Vifa5g00488 Pkinase 5.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00488 K02206 - psat:127128144 501.516