Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00484 ATGATGATTACATTCCACATGAGAGTTTTGTTCTTTTTCCTTTGGATCTTTCTCCCTTCATTTGGTAAAAGCCTGTTAACCTGTGAAACAACATCACCACATGATTCTAGCTACCGTTGTAATGAAAATGAGTTACAAAATCATCATTGTGAAACATTTGCACTCTTTTTCACAAACTCTCACTTTTCCTCCCTCTCCAACCTCACCCTATACTTAGGACTCAACAGGTTTTCCATAGCAGAAACCAATGGCTTCTCTGCACAAACTGAGTACCTTCCTCAAAATCATCCTCTTCTTATACCAATTGATTGCAAGTGCAAAAAAGGTGGTTATTTTCAAGCTGAATTAACAAAATCTACCATCAAAGGTGAGAGTTTTTATGACATTTCTCAATCACTTGAAGGCTTAACTACTTGCAAGGCTATTAAAGACAACAACCTTGGTGTCTCACCTTGGAACCTTGATGCTAAACACAAATTGATCATCCCTTTGAAATGTGCTTGCCCTTTTTCTTCTTTTGTCATACCAAAACCAAAACTTCTTCTTTCTTATCCTATAAGTGAAAATGATACTATTTCAAATTTGGCCTTAAAGTTCCATATTACAAAAGAAGCTATTCTTATTGCCAATAACTTTTCATCATCATCATCTCAAGTTCTTAGAACTAGAAGCTTAGAGCCTTTTACCTCTATTCTAATTCCATTGAATGGTAACCCTTTCTTTGAGCCTTTAACTAAACCAAAACAACCCAATTCAGATTTCCCAAGAACCAACAATATTACAGGAACTAGGCCACATAAGAAGTCAAAAATGAAAAAGAGTGAGCTTTTTATTGGCCTAATTGGTGTTGCAATTGGAGTTTCCTTTGCTTTAATAGTAACCTTTTTCTTCATTTGGTTGAGGAAAACAAAGGTGGAAGAAAAGTCATGCAAAGAAAGAGATATGGAGCTACAACATTTGAATCAAAGTGTGAGAACCACAAGTGATAAGAAAGTTTCGTTTGAGGGGTCACAGGACACTCTTGATAGTAAAATCATCGATGCAATGCCACGTAAGATGTTGTTGGAGACATACACAATTGAAGATTTGAGAAAAGTAACAGAAGATTTCAGTTCAAATTTTCATATTGAAGGGTCAGTTTTTCATGGTTGTTTAAATGGTAAGAACATGGCAATCAAAAGAGTAAAAACCGAAATGCTGTCAAAACTAGAACTTGGCCTTTTCCATGATTCACTTCATCATCATCCAAACATATTGAACCTTCTTGGTTTAAGTATATCAGAAGAGTCAACAGAGTCAGAATCTTTTTTAGTTTTTGAGTATGCTAAAAATGGTTCATTGAAAGATTGGCTTCATGGTGGCTTGGCCATCAAGAATCAGTTCATTGCTTCTTGCTATTGTTTTTTAAATTGGAACCAAAGGCTTAGAATTTGTGTTGATATAGCTAGTGCTTTGGATTACATGCACAATGTTATGAGTCCAAGTTATGTGCATAGAAATGTGAAGAGTAGGAACATCTTTTTAGATGAAGAGTTTGGTGCTAAGTTAGGAAATTTTGGGATGGCAAGTTTTGTTGTGAATGAAACTGAGGACCCTCAATTTTATTCAAGTAATTATGCTTCTTGGAGTATTGGTTATTTAGCACCTGAATATGTTCACCAAGGTGTAGTTTCAACAAGCATTGATATCTTTGCTTTTGGTGTGGTTTTGTTAGAAGTTTTATCTGGTCAAACACCTATAAATGGATCAAGTGATAGAGGGGAAGGAAGTGTTTGGCTTAGTGACAAAATAAAGAGTACTTTGAAGACAGAGGAGAATAATGTGAATGAATTACTAAGAGAGTGGATAGACAGTGCATTAGGTGAGAATTACTCATTTGATGCAGCTTTGAAAGTTGCTAATATTGCAAAAGCTTGTGTGGAGGAAGATGCATGTTTGAGGCCTAATGCAAGAGAAATTGTTGAGAAGCTATCAACATTGTTGGAGGAATTACCAAATGAGGAAAATCAAATTTTGATGACTGAAAATTCTTGCAAACCTCTTGTGGATATGTGA 2055 0.3538 MMITFHMRVLFFFLWIFLPSFGKSLLTCETTSPHDSSYRCNENELQNHHCETFALFFTNSHFSSLSNLTLYLGLNRFSIAETNGFSAQTEYLPQNHPLLIPIDCKCKKGGYFQAELTKSTIKGESFYDISQSLEGLTTCKAIKDNNLGVSPWNLDAKHKLIIPLKCACPFSSFVIPKPKLLLSYPISENDTISNLALKFHITKEAILIANNFSSSSSQVLRTRSLEPFTSILIPLNGNPFFEPLTKPKQPNSDFPRTNNITGTRPHKKSKMKKSELFIGLIGVAIGVSFALIVTFFFIWLRKTKVEEKSCKERDMELQHLNQSVRTTSDKKVSFEGSQDTLDSKIIDAMPRKMLLETYTIEDLRKVTEDFSSNFHIEGSVFHGCLNGKNMAIKRVKTEMLSKLELGLFHDSLHHHPNILNLLGLSISEESTESESFLVFEYAKNGSLKDWLHGGLAIKNQFIASCYCFLNWNQRLRICVDIASALDYMHNVMSPSYVHRNVKSRNIFLDEEFGAKLGNFGMASFVVNETEDPQFYSSNYASWSIGYLAPEYVHQGVVSTSIDIFAFGVVLLEVLSGQTPINGSSDRGEGSVWLSDKIKSTLKTEENNVNELLREWIDSALGENYSFDAALKVANIAKACVEEDACLRPNAREIVEKLSTLLEELPNEENQILMTENSCKPLVDM 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00484 684 Pfam Protein tyrosine and serine/threonine kinase 390 657 IPR001245 GO:0004672|GO:0006468
Vifa5g00484 684 Pfam LysM domain 186 216 IPR018392 -
Vifa5g00484 684 ProSiteProfiles LysM domain profile. 182 233 IPR018392 -
Vifa5g00484 684 Coils Coil 650 670 - -
Vifa5g00484 684 Gene3D Transferase(Phosphotransferase) domain 1 443 679 - -
Vifa5g00484 684 ProSiteProfiles Protein kinase domain profile. 360 661 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g00484 684 MobiDBLite consensus disorder prediction 246 266 - -
Vifa5g00484 684 FunFam PTI1-like tyrosine-protein kinase 3 442 671 - -
Vifa5g00484 684 Coils Coil 594 614 - -
Vifa5g00484 684 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 18 664 - -
Vifa5g00484 684 Gene3D Phosphorylase Kinase; domain 1 376 442 - -
Vifa5g00484 684 SUPERFAMILY Protein kinase-like (PK-like) 358 657 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00484 Vifa-Chr5 112997602 112999656 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00484 38 682 LysM Receptor-like Kinase (LYKs) Gene Family AT3G01840 38.938 2.40e-139 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vifa5g00484 PK_Tyr_Ser-Thr 6.1e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00484 - - tpra:123891373 1164.06