Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00477 ATGACATATTTCTATTTCTATCTCCATCTTTTTCTTCTTTCTTTGTTTTTCTCCATCCACACTACTCATCAGCTACAATTTTCTCAAACTCAAGTCCTCTTACAGTTAAGAAAATATCTTCAATACCCTACCTCCTTACAGATCTTTCAAAATTACAATGCTCACCTTTGTACCCTCACTCCATCTCAACACTTGAGTATTAAATGTGAGGACAATTCAGTAACTGAACTCAAAATCATGGGAGACAAAACCAATAAACATGGAAAGGTTTCCAGTTTCAATGGCATTGCAGTTCCAAATCAAACACTTTCCAAAACTTTCTCTATTGATTCTTTTGTCACAACATTGACAAGGTTAACAAGTTTAAGAGTACTTAGTTTGGTTTCTTTGGGAATTTGGGGTCCACTTCCTGATAAGATTCATAGGCTTACTTTGCTTCAAGTTTTGGATTTGAGTTCTAATTTCTTATTTGGTTCTATTCCACCAAAGATAGCTACTTTCATGAATCTTCAAATACTAACACTTGATGGAAACTACTTCAATACCACAATGCCTGATTTTTTTGAACCTTTGTCTAGTTTAAGTATCTTGAGTTTCAAAAACAATCAGTTAAAAGGCTCATTTCCTTTTTCACTATGCAAAATCAAGAATCTTACTCATGTTTCCTTCTCACACAATGAACTATCTGGTGCATTGCCGAATCTCACCGTGCTTTCGAGGTTACATGTATTGGATTTGATGGAAAATAGATTTGATTCTGAGTTACCGTTGATGCCAAAATCGCTTGTCACGGTATTGCTAAGTAAGAACTCATTCTCAGGTGAAATTCCTATTCAGTTTGGTCAACTGAGTCAGCTTCAAAATCTTGATCTTTCTTCGAATCGTCTATCCGGGGTTCCTCCTTCCTTGTTGTTTTCTTTGACAAACATCAGTTATTTGAATTTAGCAAACAATGTGCTAAGTGGTTCAATTCCAAAGAAACTGAAATGTGGAAGCAAACTTGGTTTTGTGGATATTTCTGGTAACATGTTAAGTGGTTTACTTCCTTCTTGCTTGGAAAGTATATCTGACAGAAGAGTTGTTAGATTTGGTGGAAACTGTTTGTCTGTTCATTCTCAACCTCAGGATCAGAATCAGAAACATGGTTCTTATTGTGAAGAATCTAGTTCAGGAAAGATGAAATTTTGGAGATGGGAAATTGATGCTGCAATTGCTATCATTCTTGTAGTTTTTCTTTTATTGTTAGCTTTTGGAGTTTTCTTTTACAGAAAGTATCATTCAAGAGAGATTTATAGGCATGAGATGTTGCCAAAGATTGTCCAAGATAATAATAACTCAACAACAGGAGTTTCCTCTGAACTTCTTGCCAGTGCAAGATATATTTCTCAAAAAATGAAGCTAGGGACACAAACTAGTACAACATGTAGACACTTTTCAATTCAAGAGTTGAAAGAAATCACAAGAAACTTTGATCTATCCGCTTATATTGGCGAAGGATCCATAGGAAAGCTGTACAAAGGTAAACTAGAGAATGGATCGTATGTGATGATAAGATCATTGGCTCTGAGAAAGAAATTCTCAATACAAAATCTCAAAGCTAGATTAGATTTACTCTCGAAGCTTCATCATCCAAATTTGGTTAGTCTTTTGGGTCATTGTATTGATGGTAGAGGAAAAGATGGTATTAGTCCCCAGAAACTTCATCTTGTATACGAGTATGTGCAAAATGGCGATTATCGTACACATTTGTCAGAAATTTCACTGGATAAGGCACTAAAATGGTCTGATAGATTAGCAATCTTAATTGGAGTTGCCAAGGCGGTTCATTTTTTACACACTGGTATGAAACCAGGTTGTTCTAGAAACCAATTAAAAACAAACAATATTTTACTTGATGAACATCGCTTTCCCAAGCTAAGTGACTATGGTATGTCCATAATCGCCGAAGAGATCGAAAACATTGAGGTAAACGGAGAAAAACTAAAATATTGCTTAAGGGAAGAATTAGAAGATGATGTTTACAATTTCGGATTCTTATTATTTGAATCACTTGCTGGACCAATTGCAAGTGAGAAAGGAGAAGCATTTTTTCTTAATGAAAGGGCATCATTTGACAGTCACGATGGTAGAATAAGAATTGTAGATCCAGTAGTGTTGACAAGCTGCGGTCAAGAGTCATTATCAATTGTAATATCCATCACAATCAAATGCATTTCTCCACAATCGTCGTCTCGTCCTTCTTTTGAAGATGTCCTGTGGAATTTACAATATGCAGCTCAAGTTCAAGCCTCAGCAGATGCAGAACATTATATATTCTAG 2319 0.3549 MTYFYFYLHLFLLSLFFSIHTTHQLQFSQTQVLLQLRKYLQYPTSLQIFQNYNAHLCTLTPSQHLSIKCEDNSVTELKIMGDKTNKHGKVSSFNGIAVPNQTLSKTFSIDSFVTTLTRLTSLRVLSLVSLGIWGPLPDKIHRLTLLQVLDLSSNFLFGSIPPKIATFMNLQILTLDGNYFNTTMPDFFEPLSSLSILSFKNNQLKGSFPFSLCKIKNLTHVSFSHNELSGALPNLTVLSRLHVLDLMENRFDSELPLMPKSLVTVLLSKNSFSGEIPIQFGQLSQLQNLDLSSNRLSGVPPSLLFSLTNISYLNLANNVLSGSIPKKLKCGSKLGFVDISGNMLSGLLPSCLESISDRRVVRFGGNCLSVHSQPQDQNQKHGSYCEESSSGKMKFWRWEIDAAIAIILVVFLLLLAFGVFFYRKYHSREIYRHEMLPKIVQDNNNSTTGVSSELLASARYISQKMKLGTQTSTTCRHFSIQELKEITRNFDLSAYIGEGSIGKLYKGKLENGSYVMIRSLALRKKFSIQNLKARLDLLSKLHHPNLVSLLGHCIDGRGKDGISPQKLHLVYEYVQNGDYRTHLSEISLDKALKWSDRLAILIGVAKAVHFLHTGMKPGCSRNQLKTNNILLDEHRFPKLSDYGMSIIAEEIENIEVNGEKLKYCLREELEDDVYNFGFLLFESLAGPIASEKGEAFFLNERASFDSHDGRIRIVDPVVLTSCGQESLSIVISITIKCISPQSSSRPSFEDVLWNLQYAAQVQASADAEHYIF 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00477 772 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 453 573 - -
Vifa5g00477 772 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 26 260 - -
Vifa5g00477 772 Pfam Leucine rich repeat 284 344 IPR001611 GO:0005515
Vifa5g00477 772 ProSiteProfiles Leucine-rich repeat profile. 285 306 IPR001611 GO:0005515
Vifa5g00477 772 SUPERFAMILY L domain-like 116 368 - -
Vifa5g00477 772 PANTHER UNNAMED PRODUCT 114 686 - -
Vifa5g00477 772 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 574 771 - -
Vifa5g00477 772 Gene3D Ribonuclease Inhibitor 27 258 IPR032675 -
Vifa5g00477 772 Pfam Protein tyrosine and serine/threonine kinase 492 752 IPR001245 GO:0004672|GO:0006468
Vifa5g00477 772 SUPERFAMILY Protein kinase-like (PK-like) 469 755 IPR011009 -
Vifa5g00477 772 Gene3D Phosphorylase Kinase; domain 1 451 573 - -
Vifa5g00477 772 ProSiteProfiles Protein kinase domain profile. 490 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g00477 772 Gene3D Ribonuclease Inhibitor 259 394 IPR032675 -
Vifa5g00477 772 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 262 390 - -
Vifa5g00477 772 Gene3D Transferase(Phosphotransferase) domain 1 574 770 - -
Vifa5g00477 772 SMART LRR_typ_2 143 167 IPR003591 -
Vifa5g00477 772 SMART LRR_typ_2 283 306 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00477 Vifa-Chr5 110361929 110364848 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00477 8 700 Miscellaneous Gene Families AT5G14210 55.492 0.0 721
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Vifa5g00477 PK_Tyr_Ser-Thr 1.7e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00477 - - gmx:100813412 1065.06