Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00475 ATGCCGGAGGAAACTACGTCGATTGATTACGCCATGGAGGCGGCATCCGGGCCCCACTTCTCCGGTCTTCGACTCGACGGCGGCAGACTCTCATCTTCTTCCCCAACCTCTTCTCTCGCTCCCAATTCAACCCTAACCGCAGATTCTCTTCTCAATCAACCCTTCGTTATTGGTGTTTCCGGTGGAACTGCTTCTGGAAAGACCACCGTTTGCGATATGATCATTCAACAGCTTCACGATCATCGCGTTGTTCTTGTTAATCAGGATTCGTTTTATCGTGGATTGAAACCGGACGAGTTGGAACGCGTTCACGAGTACAATTTTGATCACCCTGATGCTTTTGACACAGAGCAACTGCTAGAATGTATGAAGCAGCTCATCAGTGGCCAAAGAGTTAAAGTTCCTATTTACGACTTCAAGAAGCATCAACGCTCTTCTGATAGTTTTCGCCAGGTCAATGCATCTGATGTCATTATATTGGAGGGAATTCTTGTATTCCATGATCAAGGTGTCCGTGATCTGATGAACATGAAGATCTTTGTGGACACAGATGCTGATGTGAGGCTTGCTCGTAGAATTAGACGTGACACAGTGGAAAGGGGCAGAGACATAAACTCCGTTCTTGAAATGTATGCAAAGTTTGTTAAGCCTGCTTTTGATGACTTCGTTCTACCATCGAAGAAATATGCTGATGTGATCATTCCTCGTGGAGGTGATAATCATGTTGCCATTGATTTGATTGTGCAACACCTCCGCACAAAGCTTGGTCAACATGATCTGTGCAAAATATATCCAAACGTGTATGTTATTCAATCTACATTCCAGATAAGGGGGATGCATACATTGATTCGTGACACAGAAATATCAAAGCATGATTTTGTATTTTATTCTGATCGACTAATACGCCTGGTTGTTGAGCATGGTCTAGGTCATCTTCCTTTTACCGAAAAGCAAGTTGTTACTCCAACAGGATCTGTCTATACTGGTGTTGATTTCTGCAAGAAATTATGTGGTGTTTCAATTATTCGAAGTGGTGAAAGCATGGAAAATGCACTTCGTGCATGTTGTAAAGGCATTAAAATTGGAAAAATTCTGATACACCGGGATGGAGACAATGGAAAACAGCTTATCTATGAGAAGCTTCCCAAGGATATCTCAGAACGGCATGTCTTGCTTCTTGACCCTGTCCTTGCTACAGGTAACTCAGCCAACCAAGCAATTGAACTACTCATTCAAAAAGGAGTGCCAGAATCCCACATTATATTCTTGAATCTCATTTCTGCTCCTGAGGGCATCCACTGTGTGTGTAAAAGGTTCCCATCATTGAAAATTGTCACATCTGAGATTGATGTTGCATTAAATGAAGAGTATCGTGTTATTCCAGGATTGGGTGAATTTGGTGATCGCTACTTCGGCACCGATGATTGA 1428 0.4286 MPEETTSIDYAMEAASGPHFSGLRLDGGRLSSSSPTSSLAPNSTLTADSLLNQPFVIGVSGGTASGKTTVCDMIIQQLHDHRVVLVNQDSFYRGLKPDELERVHEYNFDHPDAFDTEQLLECMKQLISGQRVKVPIYDFKKHQRSSDSFRQVNASDVIILEGILVFHDQGVRDLMNMKIFVDTDADVRLARRIRRDTVERGRDINSVLEMYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHLRTKLGQHDLCKIYPNVYVIQSTFQIRGMHTLIRDTEISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSVYTGVDFCKKLCGVSIIRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPKDISERHVLLLDPVLATGNSANQAIELLIQKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEEYRVIPGLGEFGDRYFGTDD 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00475 475 Pfam Uracil phosphoribosyltransferase 272 473 - -
Vifa5g00475 475 CDD UMPK 56 254 IPR000764 -
Vifa5g00475 475 Pfam Phosphoribulokinase / Uridine kinase family 56 242 IPR006083 GO:0005524|GO:0016301
Vifa5g00475 475 PANTHER URIDINE KINASE 36 384 - -
Vifa5g00475 475 CDD PRTases_typeI 331 446 IPR000836 -
Vifa5g00475 475 NCBIfam uridine kinase 54 254 IPR000764 -
Vifa5g00475 475 SUPERFAMILY PRTase-like 257 474 IPR029057 -
Vifa5g00475 475 PRINTS Uridine kinase signature 84 95 - -
Vifa5g00475 475 PRINTS Uridine kinase signature 222 235 - -
Vifa5g00475 475 PRINTS Uridine kinase signature 186 196 - -
Vifa5g00475 475 PRINTS Uridine kinase signature 54 71 - -
Vifa5g00475 475 PRINTS Uridine kinase signature 129 144 - -
Vifa5g00475 475 PRINTS Uridine kinase signature 200 211 - -
Vifa5g00475 475 Gene3D - 258 473 IPR029057 -
Vifa5g00475 475 Gene3D - 51 257 IPR027417 -
Vifa5g00475 475 FunFam Uridine kinase 51 257 - -
Vifa5g00475 475 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 50 247 IPR027417 -
Vifa5g00475 475 ProSiteProfiles UvrC family, homology region profile. 160 243 IPR001162 GO:0009381
Vifa5g00475 475 FunFam Uridine kinase 258 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00475 Vifa-Chr5 109273257 109281585 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00475 1 475 PRT Gene Family AT5G40870 84.472 0.0 832
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00475 K00876 - gmx:100780005 871.692