Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00474 ATGAGCGAAAAGAGAAGAATAAGCCTTGTAGCAGGCTCATACGAACGCTTCATCTGGGGTTTCACTCTCAACCCCAACAAACAAACCCTAAACCCTCTCTTCTCCTACCCTTCCCATCTCTCCCTAATCAAATCCGTCACCATCTCCGGTTCCGTTGTCGCCTCCGGCGGCTCCGACGACACTATCCAACTCTACAATCTCTCCGCCGCTTCCTCCCTCGGTTCCCTCACCCACCACTCCTCCACCGTCACCGCTCTCTCGTTCTACTCGCCTCCTCATCTTCCTTTCCCTCGCGATCTCGTTTCTGCAGATGCCGACGGTTCCCTCGCGATCTTCGATGCTGACGGTTTCGTTCATCTCAAGACACTTCCTGTTCATAAAAAGGCTATCAATGATCTGGCTCTTCATCCGTCCGGGAAGCTTGCCCTGACTGTTTCGCGGGATAATTGTTTTGCGATGGTGAACCTTGTTCGTGGTCGGAGGAGCTTTTGTTGTCGGTTGGATAAAGAGGCGTCAATTGTTCGATTTAATGCTTCCGGTGATTCGTTTTTCATGGCTGTTGATAAGGTTGTTTCTGTTCATCAAGCGGAGGATGCTAGAGAATTCATCAAAGTTATGGAGAGAATTCTCTTTGCTGTATTCACTTGTGTTCTAGCACTTGGAGGTTCGATAATAGGAACAATAGGAGGAGCTATAAAAGGCCAAACCACAGAAGCTGCTTCTGATGGTGAGTCATTTTCCAAGGTTGCTTTGTTGACAAGTTTATTAAATGGAAAAGTGTTTATGGAATGGATATGTCCAACTGTGGCACAAGCTTATATAAATTCAGTAGAAGCAGCTTATGGAGGAGTGGTTTCAGATATTTATGACAGCATGGGAGTTAAAGGGATGTCACAAACTTGTATTATGAAACTCGCATTTCATAAATTTAACTCTTCCGACAAAATTATGAAATTATACAATGAATCATGCTGCTCAATTTGCTTCCAGGATTTTGAGAACGGAGAATTGGTGAGAATACTTCCAAAATGTTGTCACATTTATCATTTAGAATGCATTGACAAATGGCTAGTACAACAAGGATCGTGTCCTATTTGTAGAACTTATATTCTTCAATAG 1119 0.4388 MSEKRRISLVAGSYERFIWGFTLNPNKQTLNPLFSYPSHLSLIKSVTISGSVVASGGSDDTIQLYNLSAASSLGSLTHHSSTVTALSFYSPPHLPFPRDLVSADADGSLAIFDADGFVHLKTLPVHKKAINDLALHPSGKLALTVSRDNCFAMVNLVRGRRSFCCRLDKEASIVRFNASGDSFFMAVDKVVSVHQAEDAREFIKVMERILFAVFTCVLALGGSIIGTIGGAIKGQTTEAASDGESFSKVALLTSLLNGKVFMEWICPTVAQAYINSVEAAYGGVVSDIYDSMGVKGMSQTCIMKLAFHKFNSSDKIMKLYNESCCSICFQDFENGELVRILPKCCHIYHLECIDKWLVQQGSCPICRTYILQ 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00474 372 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 371 IPR013083 -
Vifa5g00474 372 ProSiteProfiles Zinc finger RING-type profile. 325 367 IPR001841 -
Vifa5g00474 372 CDD RING-H2_EL5-like 324 367 - -
Vifa5g00474 372 SMART WD40_4 116 155 IPR001680 GO:0005515
Vifa5g00474 372 SMART WD40_4 29 66 IPR001680 GO:0005515
Vifa5g00474 372 SMART WD40_4 69 113 IPR001680 GO:0005515
Vifa5g00474 372 SUPERFAMILY RING/U-box 318 370 - -
Vifa5g00474 372 SUPERFAMILY WD40 repeat-like 9 187 IPR036322 GO:0005515
Vifa5g00474 372 Gene3D - 2 211 IPR015943 GO:0005515
Vifa5g00474 372 SMART ring_2 325 366 IPR001841 -
Vifa5g00474 372 Pfam Ring finger domain 325 367 IPR001841 -
Vifa5g00474 372 PANTHER PAK1 INTERACTING PROTEIN 1 8 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00474 Vifa-Chr5 109012501 109014708 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00474 184 370 C3H Transcription Factor Family AT5G66070 29.075 1.62e-24 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00474 K14830 - gmx:100777673 284.263