Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00463 ATGTCCTCCTGCGTCACTATTCTTCGAACATCTCTCATCTTCCAACTTCGAACATCTCTCATCTTCCAACCGGTGCTTTTTGTTTCACCCGAGCGGTTTTTGAATAAGGAGTTTCTGTCTGCTATCTCTGCTGGGTCAGCTGTCTCACTCGTTGTTATTGACGAAGCACATTGTATATCTGAATGGTCTCACAATTTCCGACCTTCATTCATGAGACTTAGAGCATCACTACTTCATAGAAGTCTTAATGTAGGTTCTGTTCTCGCAATGACAGCAACTGCTACAACCACAACCTTAGATGCCATCATGTCTGCCCTAGATATTCCTTTTACAAATCTTATTCAGAATGCACACTTAAGGGACAATTTGCGTTTGTCGGCGTCTTTGATAAAAAATAGAATGAAAGACCTACTGGTTCTGATAAAGTCTCCTCCTTTTGCGGATGTTAAAGGCATCATAGTATACTGCAAATTTCAGTCTGAAACTGATCAAATTAGCAGATACTTGAATGATAACAATATCTCGGCAAAGAGTTATCATAGTGGTATTTTTGCAAAGGAACGTGGCAACGTACAGGAGTTGTTTGCTTCAAACAAGATCAGTGTGGTTGTTGCAACTGTGGCATTTGGTATGGGACTAGATAAAAGAGATGTTGGAGCAGTAATTCATTACAGTTTACCTGGAAGTCTGGAAGAGTATGTACAGGTATATGATGTCTTCTAA 723 0.3997 MSSCVTILRTSLIFQLRTSLIFQPVLFVSPERFLNKEFLSAISAGSAVSLVVIDEAHCISEWSHNFRPSFMRLRASLLHRSLNVGSVLAMTATATTTTLDAIMSALDIPFTNLIQNAHLRDNLRLSASLIKNRMKDLLVLIKSPPFADVKGIIVYCKFQSETDQISRYLNDNNISAKSYHSGIFAKERGNVQELFASNKISVVVATVAFGMGLDKRDVGAVIHYSLPGSLEEYVQVYDVF 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00463 240 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 112 IPR014001 -
Vifa5g00463 240 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 49 58 IPR002464 -
Vifa5g00463 240 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 133 240 IPR001650 -
Vifa5g00463 240 SMART helicmild6 163 238 IPR001650 -
Vifa5g00463 240 Pfam Helicase conserved C-terminal domain 150 236 IPR001650 -
Vifa5g00463 240 Gene3D - 120 237 IPR027417 -
Vifa5g00463 240 Gene3D - 6 110 IPR027417 -
Vifa5g00463 240 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 236 IPR027417 -
Vifa5g00463 240 PANTHER DNA HELICASE RECQ FAMILY MEMBER 23 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00463 Vifa-Chr5 104113708 104115838 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00463 153 234 Eukaryotic Initiation Factors Gene Family AT3G19760 28.049 1.89e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00463 K10730 - gmx:100811214 336.65