Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00450 ATGGATAAAAATCTCGCTGAAAATTCCGACGAAACACCAATGGCCGATCCCAATCTTAACGACGAAACAGCAATGCCGAAAGACGAAACCGAAGGAGAACAACCACAGCCTTCTCCGTCGGAACACGAGGAAAATCAACCCGAGGAGAAAGAGAAGAAAGAAGAAAATGTAGAAACCACAGAATCCGTAGATGCATCAGCGGATTCCGTGGAGTCTCCTCCTCCTAGCCTGGAGAAAATTTCAGAAGAAATGGATCAATTTCTGGCGAGTTTGCATGAGAAAGAAGAGATTCCTGATTACGTAGGAAAATTCTTGGATCTGGTGGAGGAGAATCTAGCGAAATGTGAACCCGGGGAAGGTAAAACAAAATGGGAAGAGATTCTGGAGAAAGATACATGGTTATTGGAGGCTGTGAATCGGATTTCGAAGCTGAAGAAAATTCTAAGCCGTCATGATGAAAACGAAACCGTAGAAGAGAAGGATGAAAAAAGAGACTCAACAAGGAACCGCATTGGTGTAATTCAACAGAAAGCCATGTCGTTTTTGGAAGAAGATTTTCGGTTGTTAATGGAAGATTCTAGAATGCCAATGGAATTGAATCCTGACGGACAGAATGTTGATTCAAAAGGAAAACATGTGGCATCGGAGGAAGGGGATCATGATCATCAACAGGACGAATCCGAGACGAATTTCCCGGGTTATACAGACGAGGCGATTGCCTGTATGAGCAAGATCGCGTGCGAGATGTTAACCGGGGGTTACGAATCAGAGTGTTGTCAGGTGTATATCGTGGCGAGAAGGACTGCGTTTGAGGAGATTCAACAGAAACTGGGGCTGGAAAGAATCAGCATTGATGATATGGTTCAGAAAGTGCAATGGGAGATTCTAGCAAGAGATATGATTCCGGCGTGGACTAACACGATCCGTAAATGCACGACCGTGTATTTTCCTGGCGAGAGGAAACTAGCTGAGGCGGTATTCTCAAGTAACAAGTCGGTTGCGGCTGGTCTATTTGGTAGCCTCTCCCGCGGAGTTGTGATACCGCTGCTCAACTTTGCAGAAGGGGCTGCCATGACTAAGCGTGCAGGCGAGAAGCTATTCAAATTGCTTGACATGTACGAAACGCTAAGAGATGTTATACCAAAGTTGGATGGACTCTTTCCTGAAGAGTCCTCCGAAGAGTTGAAGACAGAGATAACCCTCGCCAAAACACGTCTTGGCGAGGCGGCCATCGCTATCTTCTGTGACTTAGAAAGCTCAATCAAGTCAGAACCCGCGAAAAACCCAGTCCCGGGTGGCGCGGTTCACCCTCTCACTCGCTATATTATGAATTACCTCATCATAGCTGGTGATTACAAAGAAACCCTAGAACAGGTTTTCCGGGATCATTCAAAGATCGAAAGTGTAGATTCGAGTAGTAGATTCGATGAGAACGAAAATGACCTTGTTACAGAAGAAGCATCGTCGCCATTTTCAGCTCAGCTAATGAGAATCATGGACTTACTAGATGCAAGCCTAGACGGGAAAGCGAAACTGTACCGCGACATAGCATTAAGCAACTTCTTCATGATGAACAATGGTAGATACATTTTACAAAAGATCAAAAGTTCAACCGAAATGAGCCAAGTGATGGGAAACACATGGTGTAGAAAGAAATCATCTGATCTAAGAAACTATCACAAAACATACCAGAGAGAAACATGGAACAAAGTGTTGACATGTCTGAGTCAAGAAGGGTTAACTGTGAACGGGAAGGTGCAAAAGCCAGTGCTTAAAGAGAGGTTTAAAAGCTTCAATACATTGTTTGATGAGATTCATAGGACGCAAAGCTTATGGGTTGTGAAGGATGAGCAGCTTCAATCGGAGCTTCGGGTTTCGATATCTGCCGTGGTGATTCCGGCGTACAGGGCATTCTTTGGGAGATTTTCACAGAATTTAGATTCTGGGAGACAGTCAGAGAAGTATATAAAGTACCAACCTGAGGATATAGAGACTTACATTGATGATTTGTTTGATGGAAAGCCCCCTCAATCTAATGCTAGAAGGAAAACATAA 2055 0.4418 MDKNLAENSDETPMADPNLNDETAMPKDETEGEQPQPSPSEHEENQPEEKEKKEENVETTESVDASADSVESPPPSLEKISEEMDQFLASLHEKEEIPDYVGKFLDLVEENLAKCEPGEGKTKWEEILEKDTWLLEAVNRISKLKKILSRHDENETVEEKDEKRDSTRNRIGVIQQKAMSFLEEDFRLLMEDSRMPMELNPDGQNVDSKGKHVASEEGDHDHQQDESETNFPGYTDEAIACMSKIACEMLTGGYESECCQVYIVARRTAFEEIQQKLGLERISIDDMVQKVQWEILARDMIPAWTNTIRKCTTVYFPGERKLAEAVFSSNKSVAAGLFGSLSRGVVIPLLNFAEGAAMTKRAGEKLFKLLDMYETLRDVIPKLDGLFPEESSEELKTEITLAKTRLGEAAIAIFCDLESSIKSEPAKNPVPGGAVHPLTRYIMNYLIIAGDYKETLEQVFRDHSKIESVDSSSRFDENENDLVTEEASSPFSAQLMRIMDLLDASLDGKAKLYRDIALSNFFMMNNGRYILQKIKSSTEMSQVMGNTWCRKKSSDLRNYHKTYQRETWNKVLTCLSQEGLTVNGKVQKPVLKERFKSFNTLFDEIHRTQSLWVVKDEQLQSELRVSISAVVIPAYRAFFGRFSQNLDSGRQSEKYIKYQPEDIETYIDDLFDGKPPQSNARRKT 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00450 684 Coils Coil 77 97 - -
Vifa5g00450 684 MobiDBLite consensus disorder prediction 209 227 - -
Vifa5g00450 684 MobiDBLite consensus disorder prediction 1 84 - -
Vifa5g00450 684 PANTHER EXOCYST COMPLEX PROTEIN EXO70 92 673 IPR004140 GO:0000145|GO:0006887
Vifa5g00450 684 MobiDBLite consensus disorder prediction 22 60 - -
Vifa5g00450 684 SUPERFAMILY Cullin repeat-like 139 672 IPR016159 -
Vifa5g00450 684 Pfam Exo70 exocyst complex subunit 304 669 IPR046364 GO:0000145|GO:0005546|GO:0006887
Vifa5g00450 684 Gene3D Exocyst complex component Exo70 121 681 - -
Vifa5g00450 684 MobiDBLite consensus disorder prediction 199 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00450 Vifa-Chr5 99586647 99588701 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00450 62 684 EXO70 exocyst subunit family AT5G13990 49.773 0.0 610
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00450 K07195 - gmx:100820172 862.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00450 5 99586647 99588701 Vifa5g00450 5 99586647 99588701 ECH
Vifa5g00450 5 99586647 99588701 Vifa1g04971 1 775769507 775773201 PCT
Vifa5g00450 5 99586647 99588701 Vifa1g04951 1 771594732 771596897 PCT