Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00440 ATGGCTAAGAAGTACGAAGGACGTGCAGTAGGAATAGACCTAGGAACAACGTATTCTTGTGTTGCTGTGTGGCTTGATGATCACAATAGAGTTGAGATTATTCATAATGATCAAGGCAACCGAACCACTCCTTCTGTTGTTGCTTTCAACGATGATCAAAGGTTGATTGGTGATGCTGCTAAGAACCAGGTTGCATCTAACCCGCAAAACACTGTCTTTGATGCGAAAAGATTAATTGGTAGGAAGTTTAGTGATTCAGTTGTTGGAAAAGATATATTGTTGTGGCCATTCAAGGTCATTGCTGGTGTCAATGACAAACCCATGATTACCCTTAAGTATATGGGTCAAGAGAAGCAATTTTGTGCTGAGGAAATATCATCCATGATTCTCTCAAAGATGCGAGAAGTTGCAGAGGCATATCTGAATTTGCCTGTCAAGAATGCTGTTGTTACTGTGCCTTCTTACTTCAATGATTCTCAGCGAAAAGCCACCATAGATGCTGGCGCCATTGCAGGCCTTAAGGTTGTTCAAATAATCAATGAACCTACTGCTGCTGCGATTGCATATGGTCTTGATAAGAGAAGAAATTGTGATGGTAAAAGAAATATTTTTGTCTTTGACCTTGGTGGTGGGACTTTTGATGTGTCTATCCTCACAATTAAAGGTGATGTTTTTGAAGTAAAAGCCACTGCTGGAGACACTCACCTCGGAGGAGAGGACTTTGATAACAGATTGGTGAACTATTTTGTACAAGAGTTCAAGAAAAAACATAAAGTGGACATTAGTCCTAACCCAAGAGCCTTAAGGAGGTTGAGAACTGCTTGCGAAAGAGCAAAAAGGATACTCTCCTTCGCCTTTGTAACAACAATTGAGGTTGATTCTTTATTTCATGGAATTGACTTCTCTTCATCAATAACTCGTGCCAAGTTTGATGAAATTAATATAGACCTGTTTAATGAATGTATGAAAATCGTGGATAGTTGTCTGAGCGATTCAAAAATCTGCAATAGTGATATAGATGATGTTGTTCTTGTGGGTGGCTCCTCTAGGATTCCCAAAGTACAAGATCTGTTGCAACACTTTTTCAAAGGAAAAGATTTGTTCAAGGGTATAAATCCAGATGAGGCTGTTGCTTACGGTGCAGCTGTTCAGGCTGCTATTTTGAGTGAAGGCTTTAAGAATGTCCCAAACTTGGTGCTGCAAGATGTTAACCCACTGTCACTTGGTATAGCATTATACCCTGAAGAAATCATGGATGTGGTTATTCCTAGAAACACTACCATACCTGTCAAAAAGTCTAGATGGTATTTTACAGCCATAGATAACCTTTGCAGTATCTGGATTAAGGTTTATGAAGGTGAGAGAGCAAGAGTCACAGACAACAATCTACTTGGTATGTTCAGTCTTTCTTGTGTTCCAGGTGCTCCTCGGGGTCAGCCCTTTGATGTATGCTTTGTCATAGATGAAAATGGTATCCTAACTGTTTCTGCTGAGGAAGTATCTACAGGCAATACAAATCAGATCACCATAACCAATGACAAAGAAAGGTTGTCAGCACTCGAAATTAAAAAAATGATTGAAGAAGGTGAAAGATACAGTGCTGAAGATAAGAAATTCTTAAAGAAGGCCAGGGTAATGAGTGCATTGGATAAATGTGTTTATAATGTGAAGAATGCTTTAAAGAAGGATGTTAATTTAAAGCTCTCCCCTCAAGAAAGAGACAAGATTAATAATGCAATTACGGTGGCCACAAACTTACTTGACGGGAATAACAAAACTAATGAAATAGATTTTCTTGAGGATCATCTAAAGGAGCTGGACAGCATGTTGAAACACCTTGTAGCCATGACTGGCTAG 1857 0.392 MAKKYEGRAVGIDLGTTYSCVAVWLDDHNRVEIIHNDQGNRTTPSVVAFNDDQRLIGDAAKNQVASNPQNTVFDAKRLIGRKFSDSVVGKDILLWPFKVIAGVNDKPMITLKYMGQEKQFCAEEISSMILSKMREVAEAYLNLPVKNAVVTVPSYFNDSQRKATIDAGAIAGLKVVQIINEPTAAAIAYGLDKRRNCDGKRNIFVFDLGGGTFDVSILTIKGDVFEVKATAGDTHLGGEDFDNRLVNYFVQEFKKKHKVDISPNPRALRRLRTACERAKRILSFAFVTTIEVDSLFHGIDFSSSITRAKFDEINIDLFNECMKIVDSCLSDSKICNSDIDDVVLVGGSSRIPKVQDLLQHFFKGKDLFKGINPDEAVAYGAAVQAAILSEGFKNVPNLVLQDVNPLSLGIALYPEEIMDVVIPRNTTIPVKKSRWYFTAIDNLCSIWIKVYEGERARVTDNNLLGMFSLSCVPGAPRGQPFDVCFVIDENGILTVSAEEVSTGNTNQITITNDKERLSALEIKKMIEEGERYSAEDKKFLKKARVMSALDKCVYNVKNALKKDVNLKLSPQERDKINNAITVATNLLDGNNKTNEIDFLEDHLKELDSMLKHLVAMTG 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00440 618 Gene3D - 194 368 - -
Vifa5g00440 618 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Vifa5g00440 618 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 519 614 IPR029048 -
Vifa5g00440 618 ProSitePatterns Heat shock hsp70 proteins family signature 2. 205 218 IPR018181 -
Vifa5g00440 618 FunFam Heat shock 70 kDa 237 320 - -
Vifa5g00440 618 Gene3D Actin; Chain A, domain 4 237 320 - -
Vifa5g00440 618 Gene3D - 546 616 IPR029048 -
Vifa5g00440 618 Gene3D - 73 128 - -
Vifa5g00440 618 FunFam Heat shock protein 70 10 200 - -
Vifa5g00440 618 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 394 543 IPR029047 -
Vifa5g00440 618 PRINTS 70kDa heat shock protein signature 8 21 - -
Vifa5g00440 618 PRINTS 70kDa heat shock protein signature 148 168 - -
Vifa5g00440 618 PRINTS 70kDa heat shock protein signature 60 68 - -
Vifa5g00440 618 PRINTS 70kDa heat shock protein signature 339 355 - -
Vifa5g00440 618 PRINTS 70kDa heat shock protein signature 397 416 - -
Vifa5g00440 618 PRINTS 70kDa heat shock protein signature 211 221 - -
Vifa5g00440 618 PRINTS 70kDa heat shock protein signature 371 391 - -
Vifa5g00440 618 PRINTS 70kDa heat shock protein signature 38 50 - -
Vifa5g00440 618 PRINTS 70kDa heat shock protein signature 478 494 - -
Vifa5g00440 618 Gene3D - 10 386 - -
Vifa5g00440 618 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 393 545 IPR029047 -
Vifa5g00440 618 FunFam heat shock 70 kDa protein-like 73 128 - -
Vifa5g00440 618 ProSitePatterns Heat shock hsp70 proteins family signature 3. 342 356 IPR018181 -
Vifa5g00440 618 PANTHER HEAT SHOCK PROTEIN 70KDA 9 579 IPR013126 GO:0005524|GO:0140662
Vifa5g00440 618 Pfam Hsp70 protein 9 614 IPR013126 GO:0005524|GO:0140662
Vifa5g00440 618 SUPERFAMILY Actin-like ATPase domain 199 389 IPR043129 -
Vifa5g00440 618 SUPERFAMILY Actin-like ATPase domain 9 193 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00440 Vifa-Chr5 95050473 95052531 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00440 1 615 Calmodulin-binding Proteins AT3G12580 64.078 0.0 781
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00440 K03283 - gmx:102667572 862.833