Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00435 ATGAACTCACTTTGTGGAAGCTCAAATCCCATCAAAGAAAAATGTGTTCAACCAAATTCTTCAAAGAAAAATGCCACAAATTCTTGTGATGATTTAGATCAAATTAGTAGTATTCTAACCCCACAAAGCTTAAACCTACCCTCACTCAAATTTGACTTAGATGGTGATGTGGAAGTCCAATCGCCAGATAGTTCAATGTGGGAATCATTTTTCAATGACCATTTAGATAATGATTTCATGATATCATCACCTATTAGGAACAACATTAACCCTAATTCACCACAAGCTTCTACTTACAATAATTCTAACTATAATAATAACTATGTACAAGGCATGCAAATTCAAACCTTTTCACCACCTCGTTTAAATAGTTATAATAATCAACAAAAAGGAAAAGGACTTAGTCCACTTCATAGAGTTTTCAATTCACCAAATAACCAATACATGCAACATGTTGAAAATCTTTCATTGCCAGCAATTGAAGAGTTCTTAGAAGATTATCAAGTTGATGTTGATTTTTCATCAACAAAGACTATTTCTTCTTCTGATCAATGCTTTGACATGGAGACACCGATTTCGACAATTTTGGATAGTTTAACAATGCAGAATTCTTCATCAAGGTATGAAGAATCCTCAGTTATGCTTGGAGGTGGTGGCTCTTCTCAAATGTCTCAAGAGAGTGATATGTATCATCAAATGGGATCTATGGCTAGTGCTTCACTTTCACAAGCTTTACAACAAGAAAGGTATCAAGAGAAACACCAAAAGTTGCAAGCACAACAACAAAGTCTAACAGTTCCTATTCCAGTTGGAATTGAACAGGAGCAAGACAGTGGACTTCAACTGGTGCACTTGCTTCTAGCTTGTGCTGAAGCAGTTGCAAAAGAAGAATACATGCTAGCAAGGAGGTACCTACACCAGCTCAACAGAGTAGTTACACCATTAGGCGACTCCATGCAACGCGTAGCTTCATGTTTCACAGAATCTCTGAGTGCAAGACTTGCTGCAACCCTAACAACAAAGTCATCATCTATGAAAAAAATAACACCACCATCATCATCATCATCATCCTCATCATCAAGTTTCTCTACCTTTCCATCAAACGCTATGGAAGTCCTTAGGATCTACCAAATTGTCTACCAAGCTTGTCCTTACATAAAATTCGCTCACTTTACTGCTAACCAAGCAATTTTCGAGGCGTTCGAGGCTGAAGAGCGTGTCCATGTCATCGACCTTGATATCCTCCAGGGTTACCAATGGCCTGCATTCATGCAGGCATTGGCTGCACGGCCCGGCGGTGCCCCATTCCTCAGGATCACAGGTGTCGGGCCGTGCATTGAATCAGTTAGAGAAACCGGACGATGCTTAACAGAGTTAGCTCATTCTCTTCGCATCCCGTTTGAGTTCCACCCCGTTGGAGAACAATTGGAGGATCTTAAACCACACATGTTTAACCGTCGTGTAGGCGAGGCTCTAGCGGTTAACACAGTTAACCGCCTCCATCGTGTTCCGGGGAACCATCTGGGGAACTTGTTATCTATGATTCGGGACCAAGCGCCGAACATCGTGACCTTAGTGGAGCAAGAAGCAAGCCATAACGGGCCATACTTTTTAGGCCGGTTTCTCGAGGCCTTGCATTACTACTCAGCCATCTTCGACTCATTGGACGCGACATTTCCGATGGAGTCAGCACCTAGGGCAAAGGTGGAGCAGTATATCTTTGCACCAGAAATCCGGAACATCGTGGCGTGTGAAGGGGAGGAGAGGATAGAGAGGCATGAGAGGTTGGAAAAATGGAGGAAGATAATGGAAGGGAGAGGGTTCAAAGGAGTAGCGTTGAGTCCTAATGCGGTGACTCAATCGAGAATATTGTTGGGTTTGTATTCATGTGATGGGTATAGGTTAACTGAGGACAAGGGTTGCTTGTTGCTTGGGTGGCAAGATAGATCCATCATTGCTGCTTCTGCATGGCGCTGCTGA 1980 0.4253 MNSLCGSSNPIKEKCVQPNSSKKNATNSCDDLDQISSILTPQSLNLPSLKFDLDGDVEVQSPDSSMWESFFNDHLDNDFMISSPIRNNINPNSPQASTYNNSNYNNNYVQGMQIQTFSPPRLNSYNNQQKGKGLSPLHRVFNSPNNQYMQHVENLSLPAIEEFLEDYQVDVDFSSTKTISSSDQCFDMETPISTILDSLTMQNSSSRYEESSVMLGGGGSSQMSQESDMYHQMGSMASASLSQALQQERYQEKHQKLQAQQQSLTVPIPVGIEQEQDSGLQLVHLLLACAEAVAKEEYMLARRYLHQLNRVVTPLGDSMQRVASCFTESLSARLAATLTTKSSSMKKITPPSSSSSSSSSSFSTFPSNAMEVLRIYQIVYQACPYIKFAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGPCIESVRETGRCLTELAHSLRIPFEFHPVGEQLEDLKPHMFNRRVGEALAVNTVNRLHRVPGNHLGNLLSMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPMESAPRAKVEQYIFAPEIRNIVACEGEERIERHERLEKWRKIMEGRGFKGVALSPNAVTQSRILLGLYSCDGYRLTEDKGCLLLGWQDRSIIAASAWRC 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00435 659 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 228 653 IPR005202 -
Vifa5g00435 659 MobiDBLite consensus disorder prediction 1 28 - -
Vifa5g00435 659 ProSiteProfiles GRAS family profile. 273 658 IPR005202 -
Vifa5g00435 659 Pfam GRAS domain family 282 658 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00435 Vifa-Chr5 94351186 94353587 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00435 270 659 GRAS Transcription Factor Family AT1G66350 43.939 1.75e-99 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vifa5g00435 GRAS 8.5e-130 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00435 - - gmx:100805039 919.457