Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00430 ATGGAGAGTTCAAACTATAAAAATGGTTTCCAACAAATTAATGTAAAGCTAACAAGTGAACCAACACTAGTTCCACCATCCGAAGAAACAACAAAAGGAACATACTTTCTATCAAACCTTGATCAAAACATTGCTGTCATTGTTCGAACCGTTTATTGTTTCAAAAACAAAGACAAGGGAAATGAGAATGCTTGCGAAGTGATTAAGAATGCACTGAAAGATGTTCTTGTTCACTATTACCCTCTTGCTGGGAGATTGAGTATAAGCTCAGAGGGGAAACTGATTGTGGATTGTACAGGAGAAGGTGCTCTTTTTGTTGAAGCTGAAGCTAATTGTGGTATGGAGGAAATTGGTGATATTACAAAACCTGATCCTAGGACTCTTGGGATGTTGGTTTATGATATTCCTGATGCTAAACATATTCTTCAGATGCCTCCTTTGGTTGCTCAGGTGACTAAATTCAAATGTGGAGGTTTTGCCCTTGGACTATGCATGAATCACTGTATGTTTGATGGAATTGGAGCTATGGAGTTTGTGAATTCATGGGGAGAATTAGCAAGAGGTTTACCAATCTCAATCCCTCCGGTTCTCGACCGAAGCATACTAAAGGCGCGTAATCCGCCAAAGATTGAGCATTTGCACCAAGAATTTGCTGACATTGAAGACAAATCAAACACTAACACCTTATACGAAGATGAAATGGTGTATAGGTCATTCTGTTTCGATCCCGAAAAACTAACAGAATTGAAGAAAAAAGCCATGGAAGATGAAGAAGGTGTTCTTGAATCTTGCACAACATTTGAAGTGCTTTCAGCATTTGTTTGGATAGCTAGAACAAAAGCACTTAAGATGCTTGCAGAGCAAGACACTAAGCTTCTTTTTGCTGTTGATGGAAGGGCTAAATTTGAGCCAAAGCTTCCAAAAGGGTATTTTGGGAATGGAATTGTGCTAACAAAATCAGTTTGTAAAGCCGGTGAAATTACAAATAAGCCCTTTTCATATACTGTGAAACTTATCCAAGAAGCAATCAAGATGGTGAATGATGGATACATGAGATCAGCTATTGATTATTTTGAGGTAACAAGAGCTAGGCCTTCTTTGGCTTGCACACTCTTGATCACAACTTGGTCTAGGCTTTCTTTTCATATTACTGATTTCGGTTGGGGCGAACCGGTTCTGTCGGGACCGGTTGGCTTGCCGGAGAAGGAAGTTATTTTGTTCCTTTCACATGGTCAAGAGAGGAGGAACATCAATGTGCTTCTTGGTTTGCCTGCTCCTGTCATGAAGATCTTTCAAGATTTGATGAAGATTTAG 1314 0.395 MESSNYKNGFQQINVKLTSEPTLVPPSEETTKGTYFLSNLDQNIAVIVRTVYCFKNKDKGNENACEVIKNALKDVLVHYYPLAGRLSISSEGKLIVDCTGEGALFVEAEANCGMEEIGDITKPDPRTLGMLVYDIPDAKHILQMPPLVAQVTKFKCGGFALGLCMNHCMFDGIGAMEFVNSWGELARGLPISIPPVLDRSILKARNPPKIEHLHQEFADIEDKSNTNTLYEDEMVYRSFCFDPEKLTELKKKAMEDEEGVLESCTTFEVLSAFVWIARTKALKMLAEQDTKLLFAVDGRAKFEPKLPKGYFGNGIVLTKSVCKAGEITNKPFSYTVKLIQEAIKMVNDGYMRSAIDYFEVTRARPSLACTLLITTWSRLSFHITDFGWGEPVLSGPVGLPEKEVILFLSHGQERRNINVLLGLPAPVMKIFQDLMKI 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00430 437 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 22 432 - -
Vifa5g00430 437 Gene3D - 217 436 IPR023213 -
Vifa5g00430 437 Gene3D - 10 216 IPR023213 -
Vifa5g00430 437 FunFam Spermidine hydroxycinnamoyl transferase 13 217 - -
Vifa5g00430 437 FunFam Tryptamine hydroxycinnamoyl transferase 221 436 - -
Vifa5g00430 437 Pfam Transferase family 21 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00430 Vifa-Chr5 92328234 92330418 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00430 12 435 Monolignol Biosynthesis Gene Families AT5G48930 33.713 1.55e-81 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00430 K15400 - gmx:100792433 753.821