LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa5g00426	ATGGGACCAAAGCGCGGTGGAAAAGCACCAGTTGCAGCTGCTAAGAAGAAGCAGCCAGAGAAAGTGGTGAACCCGCTTTTCGAGAAGAGGCCAAAGCAATTTGGGATCGGTGGTGCTTTGCCTCCAAAGAGAGATTTGACGAGGTTTGTGAAATGGCCTAAGACTGTTCAAATCCAGAGGAAGAAGAGGATCCTCAAGCAGAGGTTGAAGGTTCCACCTGCACTCAACCAGTTCACCAAGACACTCGATAAAAACCTTGCCACAAACCTATTTAAGATGCTCCTTAAGTATAGGCCTGAGGACAAAGCTGAGAAGAAAGAGCGTCTATTGAAAAGGGCTCAAGCTGAATCTGAGGGCAAAACAGTTGAGACAAAGAAGCCTATTAATGTGAAATATGGTCTCAACCATGTTACCTATCTTATTGAGCATAACAAGGCACAACTTGTTGTGATTGCTCACGATGTCGACCCAATTGAGCTTGTTGTATGGCTCCCAGCATTGTGCAGGAAGATGGAAATTCCCTACTGCATTGTCAAGGGCAAAGCACGCCTTGGAACAATAGTTCACAAGAAAACTGCAGCTGTTTTGTGCTTGACCACTGTCAAGAATGAAGACAAAATGGAATTCAGCAGAATCCTAGAAGCCATTAAGGCGAACTTCAATGACAAGTATGAGGAGTACAGGAAGAAGTGGGGTGGCGGTATCATGGGGTCCAAATCTCAAGCAAAAACCAAGGCCAAGGAAAGACTCATTGCCAAGGAAGCTGCTCAAAGAATGACCTAG	783	0.4547	MGPKRGGKAPVAAAKKKQPEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKTVQIQRKKRILKQRLKVPPALNQFTKTLDKNLATNLFKMLLKYRPEDKAEKKERLLKRAQAESEGKTVETKKPINVKYGLNHVTYLIEHNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGTIVHKKTAAVLCLTTVKNEDKMEFSRILEAIKANFNDKYEEYRKKWGGGIMGSKSQAKTKAKERLIAKEAAQRMT	260

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa5g00426	260	PRINTS	Ribosomal protein L7A family signature	48	65	IPR001921	-
	Vifa5g00426	260	PRINTS	Ribosomal protein L7A family signature	92	105	IPR001921	-
	Vifa5g00426	260	PRINTS	Ribosomal protein L7A family signature	219	239	IPR001921	-
	Vifa5g00426	260	PRINTS	Ribosomal protein L7A family signature	187	211	IPR001921	-
	Vifa5g00426	260	PRINTS	Ribosomal protein L7A family signature	68	87	IPR001921	-
	Vifa5g00426	260	PRINTS	Ribosomal protein L7A family signature	31	48	IPR001921	-
	Vifa5g00426	260	PRINTS	Ribosomal protein L7A family signature	126	146	IPR001921	-
	Vifa5g00426	260	Coils	Coil	103	123	-	-
	Vifa5g00426	260	Pfam	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	118	208	IPR004038	-
	Vifa5g00426	260	PRINTS	Ribosomal protein L7A/RS6 family signature	130	144	IPR018492	-
	Vifa5g00426	260	PRINTS	Ribosomal protein L7A/RS6 family signature	175	189	IPR018492	-
	Vifa5g00426	260	PRINTS	Ribosomal protein L7A/RS6 family signature	165	175	IPR018492	-
	Vifa5g00426	260	PRINTS	Ribosomal protein L7A/RS6 family signature	149	162	IPR018492	-
	Vifa5g00426	260	Gene3D	-	52	235	IPR029064	-
	Vifa5g00426	260	PANTHER	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	44	243	-	-
	Vifa5g00426	260	SUPERFAMILY	L30e-like	90	231	IPR029064	-
	Vifa5g00426	260	FunFam	60S ribosomal protein L7a	52	235	-	-
	Vifa5g00426	260	ProSitePatterns	Ribosomal protein L7Ae signature.	168	185	IPR004037	GO:0042254\|GO:1990904

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa5g00426	Vifa-Chr5	91686575	91688382	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa5g00426	1	260	Cytoplasmic Ribosomal Protein Gene Family	AT3G62870	83.846	4.72e-165	455

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa5g00426	K02936		-	fve:101294198	466.848