Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00419 ATGCCAATCGCACCAACCAAACCAAAGGGCGATGGAAAGTGGAAGCAACAAATCATCAACAACAACCCAGATGAATTCGCCGTGGGTTGTTTCCTCTCGATCAGGACAACATTAGGCGATGAATTTGAAGGCCAAGTTGTTACCTTTGATCGAGCAATCAACTTCCTCGGACTCCTAGAAGGTCAAGGTCATTACCCACTTCCCATTGATTCTCATATTGACCTTCATACTCTTCAATCGAGGGAACTACTTGCTATTAGACAAGCAGAGGCAGAAGCTGAGAGGATTGGGGTTGGTGTTTCTAGTGAGGCACAAATTATCTTTGATGCTTTATCTAAAACACTTCCGGTTCACTGGGACAAGACCGTCATAGTTGTAATGAATGAGGTTCGTGTCAGCAGTCCTTATCACTCTGAATGCGTGATTGACGGTACTCCTGCTGCAAACGACCGAGTTAAGAAAGTGCTTGAGTTCGAGAGAAAGAGGCTGCAACTTCGTGATGATTCACCTCCCACAGATTATTTAAGAAGAGGAAGCACAAGGCAAGTCACTACTCCCAACAACATCTACAAGCAAACAGTTCCACCCAGACTGATGCTGAACGAAGTAGACATGTATGAATTTTTCGTTAAGATTACTGATGAAATGAAGGCATTCAAAGCTTACTACAAGCTCCGCCTTGAACGCATAAACAAGCGTCACCTTGGTGCTAGGCTCAAGAGAGCTGCTGAGGCAGAAAAGGAGGACAACAAGAAGTGA 759 0.4466 MPIAPTKPKGDGKWKQQIINNNPDEFAVGCFLSIRTTLGDEFEGQVVTFDRAINFLGLLEGQGHYPLPIDSHIDLHTLQSRELLAIRQAEAEAERIGVGVSSEAQIIFDALSKTLPVHWDKTVIVVMNEVRVSSPYHSECVIDGTPAANDRVKKVLEFERKRLQLRDDSPPTDYLRRGSTRQVTTPNNIYKQTVPPRLMLNEVDMYEFFVKITDEMKAFKAYYKLRLERINKRHLGARLKRAAEAEKEDNKK 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00419 252 PANTHER LSM12 HOMOLOG 15 62 IPR039683 -
Vifa5g00419 252 Pfam Anticodon-binding domain 72 155 IPR019181 -
Vifa5g00419 252 Gene3D - 211 252 - -
Vifa5g00419 252 ProSiteProfiles AD domain profile. 71 164 IPR047574 -
Vifa5g00419 252 SMART AD_2 68 155 IPR019181 -
Vifa5g00419 252 FunFam 60S ribosomal protein L13 210 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00419 Vifa-Chr5 87348107 87349471 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00419 209 236 Cytoplasmic Ribosomal Protein Gene Family AT3G49010 67.857 8.73e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00419 K23643 - gmx:100499950 207.608