Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00418 ATGGATCCCAAAAACTCACAACCATCAAAGAACAACATGGGAGATGAAAACAAACAACAAATATCGGAATCAAAGAATCTTCAGACAGTGTTATCTGAAACGAAACAAGACGAAACAAAGAAACAGCTAGCACCAAAAAGAACATCAAACAAAGACAGACACACAAAAGTTGAAGGACGAGGAAGAAGAATAAGGATGCCGGCTTTATGCGCTGCAAGAATATTTCAACTGACGAAAGAGTTGGGTCATAAATCGGATGGTGAAACAATTCAATGGCTTCTTCAACAATCCGAGCCATCAATCATAGCTGCAACGGGAACAGGAACAATTCCAGCTTCAGCTATGGCTTCATCCGGTAACAGTTTGACACCACAAGGTTCATCTTTGTCTTCTGGTTTACAATTGCAAACCAGCTGGGCCACCCATCAGGCCCATCAGGTTAGCTCATCAAGTTTATGGCCCCATGGATTTGGATTTCATCAATCATCATCTGGTTTAACTACTGGTATAGCTAGTGAAAATAGTTCAAGTTATTTTCAGAAAATTGGGTTTTCTGGATTTGATATGCCAGGGACTAATTTGGGTGGGATGAGTTTTACATCAATTTTGGGTGGGAATCAGCAGATGCCACCTGGGTTGGAACTTGGTTTGTCACAAGATGGACATATTGGGGTGTTGAATCAACAGGCTTTGAGTCAGATTTATCACCAGTTTGGTCAAAATCATCAAACTAGGGTTCATCAGCAAAATCACAATCCTACTAAGGATGATTCTCAAAATTCAGAACAGTAG 792 0.4053 MDPKNSQPSKNNMGDENKQQISESKNLQTVLSETKQDETKKQLAPKRTSNKDRHTKVEGRGRRIRMPALCAARIFQLTKELGHKSDGETIQWLLQQSEPSIIAATGTGTIPASAMASSGNSLTPQGSSLSSGLQLQTSWATHQAHQVSSSSLWPHGFGFHQSSSGLTTGIASENSSSYFQKIGFSGFDMPGTNLGGMSFTSILGGNQQMPPGLELGLSQDGHIGVLNQQALSQIYHQFGQNHQTRVHQQNHNPTKDDSQNSEQ 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00418 263 MobiDBLite consensus disorder prediction 34 63 - -
Vifa5g00418 263 MobiDBLite consensus disorder prediction 242 263 - -
Vifa5g00418 263 MobiDBLite consensus disorder prediction 1 33 - -
Vifa5g00418 263 MobiDBLite consensus disorder prediction 1 64 - -
Vifa5g00418 263 Pfam TCP family transcription factor 48 148 IPR017887 -
Vifa5g00418 263 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 14 252 IPR005333 GO:0003700
Vifa5g00418 263 ProSiteProfiles TCP domain profile. 50 104 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00418 Vifa-Chr5 87168924 87169715 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00418 15 235 TCP Transcription Factor Family AT3G27010 57.143 1.58e-76 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vifa5g00418 TCP 2.8e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00418 - - psat:127128219 460.299