Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00413 ATGGCGACCTCTTTCAATCCACGAACCGGCTTTCGCTTCTTCAAACCACAACTTTTCTCCGTTCCCTTATCATCATTCCCACTTTCCCATGCTCTCCCTCAATCGTATTGCACCTTCAAATTCCCAGCCACTCGCTGCCGTTACTCATCTCTTGAAGTTAAAGATGTTAGTTATCAACCTCCAGGGACTCAGCTTAACCTTCTCAATTCAGTTAGTTTTTCACTTCCAGAGAAGAGTTTTGGTCTAATTTTTGGACAAAGTGGAAGCGGAAAAACAACACTGTTGCAGCTTCTTGCAGGAATAAGCAAACCAACATCTGGATCTATTTACATCCAAAAATATGGGGATGATGGAAATCCTAGTCAATCTCCGGAGCCCTTGGTGCCAGAAAGGGTTGGTATTGTCTTCCAGTTTCCAGAGAGGTATTTTGTTGCTGATACTGTACTTGATGAAGTCACTTTTGGGTGGCCAAGGCAAAAGGGTAATGATCAATCAAGGGAGCAACTTGCTCTAGGGCTTCAGAGGGCAATTAACTGGGTTGGATTAAGTGGGATATCATTGGATAAGAATCCTCACTCCCTCAGCGGTGGTTACAAACGTCGCCTTGCCTTGGCAATACAATTAGTGCAAATCCCTGATTTATTAATATTGGACGAGCCTCTTGCTGGACTTGATTGGAAAGCGCGTGTGGATGTTGTGAAGCTTTTAAAGCATCTAAAAAAAGAATTAACCGTGCTAGTTGTCAGCCATGACTTGAGAGAGTTTGCGAGTCTAGTTGATCAATCATGGAGGATGGAAATGGGTGGCAATCTTAGACAGGAGCTTCTACCATTATAA 837 0.4337 MATSFNPRTGFRFFKPQLFSVPLSSFPLSHALPQSYCTFKFPATRCRYSSLEVKDVSYQPPGTQLNLLNSVSFSLPEKSFGLIFGQSGSGKTTLLQLLAGISKPTSGSIYIQKYGDDGNPSQSPEPLVPERVGIVFQFPERYFVADTVLDEVTFGWPRQKGNDQSREQLALGLQRAINWVGLSGISLDKNPHSLSGGYKRRLALAIQLVQIPDLLILDEPLAGLDWKARVDVVKLLKHLKKELTVLVVSHDLREFASLVDQSWRMEMGGNLRQELLPL 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00413 278 Pfam ABC transporter 68 221 IPR003439 GO:0005524
Vifa5g00413 278 PANTHER HEAVY METAL TRANSPORTER 51 274 - -
Vifa5g00413 278 FunFam ABC transporter I family member 11 chloroplastic 41 276 - -
Vifa5g00413 278 Gene3D - 43 276 IPR027417 -
Vifa5g00413 278 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 51 278 IPR003439 GO:0005524
Vifa5g00413 278 SMART AAA_5 77 269 IPR003593 GO:0016887
Vifa5g00413 278 CDD ABC_cobalt_CbiO_domain1 52 268 IPR015856 GO:0005524|GO:0016020|GO:0055085
Vifa5g00413 278 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 49 268 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00413 Vifa-Chr5 85200938 85204898 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00413 51 252 Calmodulin-binding Proteins AT2G36910 25.837 4.28e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00413 - - vun:114196181 421.394