Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00410 ATGGACAACAATTATTCTATGTTGTTTCCCTGTCCTCCTTCTTCAAGCTACACAATTCCAACCAGTGGTTTGATCAACAATGGTCAAAGCTCAAATGCATTTCTAGGTTTGAAGCCTAGTAATAATAATATTGATCATCATCTTCATGATGATGATCTTGTGAAAGGAGATGAATCAAGTGTTAAAAAGAAAGGAGAGAAAAAAGCTAAGAAGCCTAAATATGCTTTTCAAACTAGGAGTCAAGTTGATATACTTGATGATGGTTATAGATGGAGGAAATATGGACAAAAAGCTGTTAAAAACAACAAATTTCCCAGGAGCTACTATAGATGCACACATCAAGGGTGCAATGTGAAGAAACAAGTGCAACGTTTAACCAGAGATGAGGGAGTAGTGGTGACAACATATGAGGGAGTTCATACTCACCCTATTGAGAAAACAACTGATAACTTTGAGCATATCTTGAGTCAGATGCAAATATACACTCCCTTTTGA 495 0.3636 MDNNYSMLFPCPPSSSYTIPTSGLINNGQSSNAFLGLKPSNNNIDHHLHDDDLVKGDESSVKKKGEKKAKKPKYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTRDEGVVVTTYEGVHTHPIEKTTDNFEHILSQMQIYTPF 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00410 164 Gene3D WRKY domain 70 144 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa5g00410 164 SMART WRKY_cls 85 144 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa5g00410 164 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 46 147 IPR044810 GO:0003700
Vifa5g00410 164 FunFam WRKY transcription factor 57 71 145 - -
Vifa5g00410 164 MobiDBLite consensus disorder prediction 51 65 - -
Vifa5g00410 164 SUPERFAMILY WRKY DNA-binding domain 77 144 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa5g00410 164 Pfam WRKY DNA -binding domain 86 143 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa5g00410 164 ProSiteProfiles WRKY domain profile. 80 145 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa5g00410 164 MobiDBLite consensus disorder prediction 51 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00410 Vifa-Chr5 83388021 83389361 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00410 26 164 WRKY Transcription Factor Family AT5G13080 64.430 3.51e-59 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa5g00410 WRKY 1.5e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00410 - - psat:127128225 272.322