Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00408 ATGGATTGGGATTGGAAAGAGTTTGCTTGGGATCCATCTGGGTTGGAGGAGATGAAGAATGAAGGAGATTCAATGGATTTGAGGCTTGGTGAGGCTTCTGATTCATTGGAAAAATCGGTTCGAGAAAGGACTAGGAGAAAGGATGATGATTCGAAAGGTGTGTCGTCGTTTTCTGGATCATCGAAAAGATCGCGGTCGCAGAATGGATTGGTGAATTTGATTTGCTCGGTTGATGGATGTAACGCGGATCTTAGTGATTGTAGAGAGTATCATAAGAGGCATAGAGTTTGCGAAAAGCACTCGAAAACTCCTGTTGTGTTGGTTGGAGGTAAGCAGCAGAGATTCTGCCAACAATGTAGCAGGTTTCATTCGCTTGCGGAGTTTGATGAGGTTAAGAGGAGTTGCAGGAAACGTCTTGATGGACATAATCGGCGGAGGAGGAAACCTCAACCGCCTTCTCTTTTCATGGCTGCTGAGAAATTCATGTACAATTACAAAGGTCCTAGAATCCTGCACTTTGGTAACCCTCAGGCATATGTGAATCCTATTATGAGAAACATTTGGCCTGCAACTGCAATAACCGAAGCTGAACCAAGTTACGACCATAACCGATTTTTGTATCGTATCGACAAACATAAACAGGAAAAAGGACATCCTCTATGGCAAGAAACTGTCCCTAAAGCCGGCGATGTTAACGAAGCAGCGCCGGGGATTCCTATCAGTCAGCCTATCCGTGGTGCCGTTGGTTCACCCGCAGGTGGAAAAGGCGGTAGGAAGCTCTCTTCTGATAGCAAACCTGGATCTTTTGACTCGGGTTGTGCTCTCTATCTTCTGTCAACACTTCAATCACAAAGTTCCGAGCTGAGTTTGATGCAGTCCAGCATCAACGACAGTCCAACACAGTCTTCCTCTGGAACGATGCGATTTGATGCCACGAACGAATGCAAACAGCAAACAAACCTTCAATGTAATGGGATGCTGCAAATGGGGCCTAATAATGGTTCGATGGAAAATGAAAACTCGCTAACCCTTCCGTTTTTCTGGGAGTAA 1050 0.4543 MDWDWKEFAWDPSGLEEMKNEGDSMDLRLGEASDSLEKSVRERTRRKDDDSKGVSSFSGSSKRSRSQNGLVNLICSVDGCNADLSDCREYHKRHRVCEKHSKTPVVLVGGKQQRFCQQCSRFHSLAEFDEVKRSCRKRLDGHNRRRRKPQPPSLFMAAEKFMYNYKGPRILHFGNPQAYVNPIMRNIWPATAITEAEPSYDHNRFLYRIDKHKQEKGHPLWQETVPKAGDVNEAAPGIPISQPIRGAVGSPAGGKGGRKLSSDSKPGSFDSGCALYLLSTLQSQSSELSLMQSSINDSPTQSSSGTMRFDATNECKQQTNLQCNGMLQMGPNNGSMENENSLTLPFFWE 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00408 349 ProSiteProfiles Zinc finger SBP-type profile. 72 149 IPR004333 GO:0003677
Vifa5g00408 349 MobiDBLite consensus disorder prediction 232 266 - -
Vifa5g00408 349 FunFam Squamosa promoter-binding-like protein 14 66 136 - -
Vifa5g00408 349 MobiDBLite consensus disorder prediction 15 53 - -
Vifa5g00408 349 Gene3D - 66 136 IPR036893 GO:0003677|GO:0005634
Vifa5g00408 349 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 30 305 IPR044817 GO:0003677
Vifa5g00408 349 MobiDBLite consensus disorder prediction 15 65 - -
Vifa5g00408 349 Pfam SBP domain 75 148 IPR004333 GO:0003677
Vifa5g00408 349 SUPERFAMILY SBT domain 74 154 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00408 Vifa-Chr5 82207011 82208793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00408 74 200 SBP-box Gene Family AT5G50670 55.639 3.90e-44 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vifa5g00408 SBP 4.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00408 - - lja:Lj1g3v3847150.1 477.633