Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00397 ATGAGTGCTACAGATGGTCTAAATAGAGGAATGGAAGTGATTGACACGGGAGTTGCTCTAAGTGTTCCAGTCGGTGGAGCAACCCTAGGTCGAATTTTCAACGTGCTTGGAGAGCCTATTGATAATTTGGGTCCTGTAGATACTCGCACAACATCTCCTATTCATAGATCTGCGCCTGCCTTTATACAGTTAGATACACAATTATCCATTTTTGAAACAGGAATTAAAGTAGTCGATCTTTTAGCTCCTTATCGCCGTGGCGGAAAAATAGGACTTTTCGGTGGAGCTGGGGTAGGTAAAACAGTTCTCATTATGGAATTGATCAATAACATTGCCAAAGCTCATGGAGGTGTATCCGTATTTGGCAGAGTAGGTGAGCGTACTCGTGAGGGAAATGATCTTTATATGGAAATGAAAGAATCCGGAGTAATTAATGAAAAAAATATTGCGGAATCAAAAGTAGCTCTAGTCTACGGTCAAATGAATGAACCGCCCGGAGCTCGTATGAGAGTTGGTTTAACTGCCCTAACTATGGCAGAATATTTCCGAGATGTCAATGAGCAGGACGTCCTTCTATTTATCGACAATATCTTCCGTTTTGTCCAAGCCGGATCCGAAGTATCCGCCTTATTGGGCCGAATGCCTTCCGCTGTGGGTTATCAACCCACCCTGGGTACTGAAATGGGTACTTTACAAGAAAGAATTACTTCTACCAAAGAAGGGTCTATAACTTCTATTCAAGCAGTTTATGTACCTGCAGACAATTTGACTGATCCTGCTCCTGCCACGACATTTGCACATTTGGATGCAACTACTGTACTATCAAGAGGATTAGCTGCCAAAGGTATCTATCCAGCAGTAGATCCTTTAGATTCAACGTCAACCATGCTCCAACCTCGCATCGTCGGTGAAGAACATTATGAAACTGCGCAAAGAGTGAAACAAACGTTACAACGTTACAAAGAACTTCAGGACATTATAGCTATTCTTGGGTTGGACGAATTATCCGAAGAGGATCGCTTAACCGTAGCAAGAGCACGAAAAATTGAACGTTTCTTATCACAACCTTTTTTCGTAGCAGAAGTATTTACCGGTTCCCCAGGGAAATATGTTGGTCTAGCAGAAACAATTCGAGGATTTAAATTGATTCTTTCTGGAGAATTAGATAGTCTTCCTGAACAAGCCTTTTATTTGAAATGA 1200 0.4175 MSATDGLNRGMEVIDTGVALSVPVGGATLGRIFNVLGEPIDNLGPVDTRTTSPIHRSAPAFIQLDTQLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGRVGERTREGNDLYMEMKESGVINEKNIAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTEMGTLQERITSTKEGSITSIQAVYVPADNLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDSLPEQAFYLK 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00397 399 ProSitePatterns ATP synthase alpha and beta subunits signature. 285 294 IPR020003 GO:0005524
Vifa5g00397 399 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 74 294 IPR000194 GO:0005524
Vifa5g00397 399 CDD F1-ATPase_beta_CD 21 299 - -
Vifa5g00397 399 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 297 398 - -
Vifa5g00397 399 PANTHER ATP SYNTHASE 1 398 - -
Vifa5g00397 399 CDD ATP-synt_F1_beta_C 301 398 - -
Vifa5g00397 399 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 299 IPR027417 -
Vifa5g00397 399 SMART AAA_5 86 278 IPR003593 GO:0016887
Vifa5g00397 399 FunFam ATP synthase subunit beta 297 399 - -
Vifa5g00397 399 Gene3D - 20 296 IPR027417 -
Vifa5g00397 399 Gene3D - 297 399 IPR024034 -
Vifa5g00397 399 NCBIfam F0F1 ATP synthase subunit beta 1 398 IPR005722 GO:0015986|GO:0045261|GO:0046933
Vifa5g00397 399 Hamap ATP synthase subunit beta [atpB]. 1 398 IPR005722 GO:0015986|GO:0045261|GO:0046933
Vifa5g00397 399 FunFam ATP synthase subunit beta 20 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00397 Vifa-Chr5 77743070 77744337 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00397 8 351 Primary Pumps ATPases(2) AT1G20260 27.005 1.14e-27 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00397 K02112 - mnt:24286633 753.436