Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00393 ATGACAATAACTCCTCCTCCTTCTGATACTGAGGTTTCTGCACTTGAAAAAAAAAATCTGGGGCGTATCACGCAAATAATCGGTCCGGTACTCGATGTAGTTTTTCCACCAGGGAAGATGCCTTATATTTACAACGCTCTGATAGTTCAAGGTCGAGATACGGTTGGCCAACAAATTAACGTAACGTGTGAAGTACAGCAATTATTAGGAAATAATAGAATTAGAGCTGTAGCTATGAGTGCTACAGATGGTCTAAATAGAGGAATGGAAGTGATTGACACGGGAGTTGCTCTAAGTGTTCCAGTCGGTGGAGCAACCCTAGGTCGAATTTTCAACGTGCTTGGAGAGCCTATTGATAATTTGGGTCCTGTAGATACTCGCACAACATCTCCTATTCATAGATCTGCGCCTGCCTTTATACAGTTAGATACACAATTATCCATTTTTGAAACAGGAATTAAAGTAGTCGATCTTTTAGCTCCTTATCGCCGTGGCGGAAAAATAGGACTTTTCGGTGGAGCTGGGGTAGGTAAAACAATTCTCATTATGGAATTGATCAATAACATTGCCAAAGCTCATGGAGGTGTATCCGTATTTGGCGGAGTAGGTGAGCGTACTCGTGAGGGAAATGATCTTTATATGGAAATGAAAGAATCCGGAGTAATTAATGAAAAAAATATTGCGGAATCAAAAGTAGCTCTAGTCTACGGTCAAATGAATGAACCGCCCGGAGCTCGTATGAGAGTTGGTTTAACTGCCCTAACTATGGCAGAATATTTCCGAGATGTCAATGAGCAGGACGTCCTTCTATTTATCGACAATATCTTCCGTTTTGTCCAAGCCGGATCCGAAGTATCCGTCTTATTGGGCCGAATGCCTTCCGCTGTGGGTTATCAACCCACCCTGGGTACTGAAATGGGTACTTTACAAGAAAGAATTACTTCTACCAAAGAAGGGTCTATAACTTCTATTCAAGCAGTTTATGTACCTGCAGACGATTTGACTGATCCTGCTCCTGCCACGACATTTGCACATTTGGATGCAACTACTGTACTATCAAGAGGATTAGCTGCCAAAGGTATCTATCCAGCAGTAGATCCTTTAGATTCAACGTCAACCATGCTCCAACCTCGCATCGTCGGTGAAGAACATTATGAAACTGCGCAAAGAGTGAAACAAACGTTACAACGTTACAAAGAACTTCAGGACATTATAGCTATTCTTGGGTTGGACGAATTATCCGAAGAGGATCGCTTAACCGTAGCAAGAGCACGAAAAATTGAACGTTTCTTATCACAACCTTTTTTCGTAGCAGAAGTATTTACCGGTTCCCCAGGGAAATATGTTGGTCTAGCAGAAACAATTCGAGGATTTAAATTGATTCTTTCTGGAGAATTAGATAGTCTTCCTGAACAAGCCTTTTATTTGGTGGGTAATATCGATGAAGCTACTGCGAAGGCTACGAACTTAACTTAG 1476 0.4167 MTITPPPSDTEVSALEKKNLGRITQIIGPVLDVVFPPGKMPYIYNALIVQGRDTVGQQINVTCEVQQLLGNNRIRAVAMSATDGLNRGMEVIDTGVALSVPVGGATLGRIFNVLGEPIDNLGPVDTRTTSPIHRSAPAFIQLDTQLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTILIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEKNIAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSVLLGRMPSAVGYQPTLGTEMGTLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDSLPEQAFYLVGNIDEATAKATNLT 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00393 491 Pfam ATP synthase alpha/beta family, beta-barrel domain 23 95 IPR004100 GO:0046034|GO:1902600
Vifa5g00393 491 ProSitePatterns ATP synthase alpha and beta subunits signature. 363 372 IPR020003 GO:0005524
Vifa5g00393 491 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 377 IPR027417 -
Vifa5g00393 491 Gene3D - 375 491 IPR024034 -
Vifa5g00393 491 Hamap ATP synthase subunit beta [atpB]. 18 490 IPR005722 GO:0015986|GO:0045261|GO:0046933
Vifa5g00393 491 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 19 95 IPR036121 GO:0046034|GO:1902600
Vifa5g00393 491 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 375 489 - -
Vifa5g00393 491 Gene3D - 98 374 IPR027417 -
Vifa5g00393 491 PANTHER ATP SYNTHASE 16 490 - -
Vifa5g00393 491 FunFam ATP synthase subunit beta 375 491 - -
Vifa5g00393 491 Gene3D - 12 96 - -
Vifa5g00393 491 CDD F1-ATPase_beta_CD 99 377 - -
Vifa5g00393 491 CDD ATP-synt_F1_beta_N 19 95 - -
Vifa5g00393 491 FunFam ATP synthase subunit beta 79 424 - -
Vifa5g00393 491 FunFam ATP synthase subunit beta, chloroplastic 18 97 - -
Vifa5g00393 491 FunFam ATP synthase subunit beta 98 374 - -
Vifa5g00393 491 NCBIfam F0F1 ATP synthase subunit beta 20 490 IPR005722 GO:0015986|GO:0045261|GO:0046933
Vifa5g00393 491 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 152 372 IPR000194 GO:0005524
Vifa5g00393 491 CDD ATP-synt_F1_beta_C 379 486 - -
Vifa5g00393 491 SMART AAA_5 164 356 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00393 Vifa-Chr5 77722995 77724470 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00393 23 429 Primary Pumps ATPases(2) AT1G20260 26.923 3.43e-27 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00393 K02112 - gmx:3989272 909.057