Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00389 ATGATTTATGGTAGGTGTGCAGCTTGCAAGAATCAAAGAAGAAGGTGTCCACCTGATTGCATTTTCTTTCCATATTTTCCTCCCAATGATCCTCAAAGATTTGCATTTGTTCATAGAATCTATGGTGGTAGCAATGTTGGAAAAAAACTTCAGCAATTGCCTCATTATGTAAGAGAAGAAGCTGCAAATAATTTATATTTGGAAGCAAAATGTAGAATTCAAGATCCTGTTTATGGATGTGTTGGGATTATTTCTAAATTGTATCAACAAATCCATGATACACAAATTGAGTTGACCAAAATTCAGACTCAGATTGCTTTTCATAAACTCCAAAATCCACAATTTCAAGCTGAAAAATCAAACTTCAATGTTGAATCAAACTTAAACTCTTTGCCACCTCAGAGTAACAACAGCATGGGGCAGTTTCAATGGCCTAGTCAAGCTACTAATTGGTTCAATTAA 462 0.3463 MIYGRCAACKNQRRRCPPDCIFFPYFPPNDPQRFAFVHRIYGGSNVGKKLQQLPHYVREEAANNLYLEAKCRIQDPVYGCVGIISKLYQQIHDTQIELTKIQTQIAFHKLQNPQFQAEKSNFNVESNLNSLPPQSNNSMGQFQWPSQATNWFN 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00389 153 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 133 - -
Vifa5g00389 153 MobiDBLite consensus disorder prediction 126 153 - -
Vifa5g00389 153 Pfam Lateral organ boundaries (LOB) domain 5 102 IPR004883 -
Vifa5g00389 153 ProSiteProfiles LOB domain profile. 4 105 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00389 Vifa-Chr5 76683564 76684164 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00389 5 116 AS2 family AT3G26660 63.393 1.88e-47 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vifa5g00389 LOB 6.4e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00389 - - lang:109328513 212.231