Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00388 ATGAGGAAGAAAAGTATTCCTTATTGTTCTTTTCAATATCCGTCTTTTTATTATGATACTTTTGATGATAAACACGCACAAGATTTAAGAGCGGATCAATGTCAGAATGACAATGCTGAGAAACAGAAATATGAATGTCATGTTTGCGGGAAGGCTTTTCCATCCCAAAACGGTTTGAATGGGCACATGAGAATACACAAAAAAGATAACAAGGGTATTCCTCCGCGACCAGCTTCATCTACCCCGAATATTTATTTACCGAAATATTTGCCACCAAGATCACATAAATGCCGCAAGAGAAATTATGATATCAGTACTTTTGATAATCAACACTTTTCTTGTGATAATAGTCATGGTGGTGACGGTAAAAGACTGAAGCTTCACAGTAATATTGTTGATGAGAAGATCAAGGAACAAGCTGCGACGCCAAGTATAGGTCATGTTAACGGCATTGATGAAACTGTGAAGATGAAAGTGAAGGATGTTGATGTTGAGATTCAAGATTGTTAA 510 0.3667 MRKKSIPYCSFQYPSFYYDTFDDKHAQDLRADQCQNDNAEKQKYECHVCGKAFPSQNGLNGHMRIHKKDNKGIPPRPASSTPNIYLPKYLPPRSHKCRKRNYDISTFDNQHFSCDNSHGGDGKRLKLHSNIVDEKIKEQAATPSIGHVNGIDETVKMKVKDVDVEIQDC 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00388 169 SMART c2h2final6 44 66 IPR013087 -
Vifa5g00388 169 Pfam C2H2-type zinc finger 44 68 - -
Vifa5g00388 169 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 71 IPR013087 -
Vifa5g00388 169 FunFam Zinc finger protein 449 42 67 - -
Vifa5g00388 169 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
Vifa5g00388 169 Gene3D Classic Zinc Finger 23 81 - -
Vifa5g00388 169 SUPERFAMILY beta-beta-alpha zinc fingers 41 69 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00388 Vifa-Chr5 75244141 75244650 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa5g00388 zf-C2H2_6 4.1e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00388 - K09228 psat:127131701 169.088