Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00387 ATGAGGAAGAAAAGTATTCCTTATTGTTCTTTTCAATATCCGTCTTTTTATTATGATACTTTTGATGATAAACACGCACAAGATTTAAGAGCGGATCAATGTCAGAATGACAATGCTGAGAAACAGAAACATGAATGTCATGTTTGCAGGAAGGCTTTTCCATCCCAAAACGGTTTGAATGGGCACATGAGAATACACAAAAAAGATAACAAGGGTATTCCTCCGCGACCAGCTTCATCTACTCCGAATATTGATTTATCGAAATATTTGCCACCAAGATCACATAAATGCCGCAAGAGAAATTATGATATCAATACTTTTGATAATCAACACTTTCCTTGTGATAATAGTCATGGTGGTGACGGTAAAAGACTGAAGCTTCACAGTAATATTGTTGATGAGAAGATCAAGGAACAAGCTGCGACGCCAATTAGTGGTGATGTTAGCGGCATAGATGGAACAGTGAAGATGAAAGGGATATTGAGATTCAAGATTCCTAAAGAAAATTAG 510 0.3667 MRKKSIPYCSFQYPSFYYDTFDDKHAQDLRADQCQNDNAEKQKHECHVCRKAFPSQNGLNGHMRIHKKDNKGIPPRPASSTPNIDLSKYLPPRSHKCRKRNYDINTFDNQHFPCDNSHGGDGKRLKLHSNIVDEKIKEQAATPISGDVSGIDGTVKMKGILRFKIPKEN 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00387 169 Pfam C2H2-type zinc finger 44 68 - -
Vifa5g00387 169 SUPERFAMILY beta-beta-alpha zinc fingers 41 69 IPR036236 -
Vifa5g00387 169 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
Vifa5g00387 169 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 71 IPR013087 -
Vifa5g00387 169 SMART c2h2final6 44 66 IPR013087 -
Vifa5g00387 169 Gene3D Classic Zinc Finger 23 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00387 Vifa-Chr5 75124180 75124689 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa5g00387 zf-C2H2_6 5.5e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00387 - K09228 psat:127131701 162.155