Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00384 ATGAGGAAGAAAAGTATTCCTTATTGTTCTTTTCAATATCCGTCTTTTTATTATGATTCTTTTGATGATAAACACGCACAAGATTTAAGAGCGGATCAATGTCAGAATGACAATGCTGAGAAACAGAAACATGAATGTCATGTTTGCGAGAAGGCTTTTCCATCCCAAAACGGTTTGAATGGGCACATGAGAATACACAAAAAAGATAACAAGGGTATTCCTCCGCGATCAGCTTCATCTACTCCGAATATTGATTTATCACATAAATGCCGCAAGAGAAATTATGATATCAATACTTTTGATAATCAACACTTTTCTTGTGATAATAGTCATGGTGGTGACGGTAAAAGACTGAAGCTTCACAGTAATATTGTTGATGAGAAGATCAAGGAACAAGCTGCGACGCCAATTAGTGGTGATGTTAGCGGCATAGATGAAACTGTGAAGATGAAAGGGATATTGAGATTCAAGATTCCTAAAGAAAATTAG 489 0.3599 MRKKSIPYCSFQYPSFYYDSFDDKHAQDLRADQCQNDNAEKQKHECHVCEKAFPSQNGLNGHMRIHKKDNKGIPPRSASSTPNIDLSHKCRKRNYDINTFDNQHFSCDNSHGGDGKRLKLHSNIVDEKIKEQAATPISGDVSGIDETVKMKGILRFKIPKEN 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00384 162 SMART c2h2final6 44 66 IPR013087 -
Vifa5g00384 162 SUPERFAMILY beta-beta-alpha zinc fingers 41 69 IPR036236 -
Vifa5g00384 162 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
Vifa5g00384 162 Gene3D Classic Zinc Finger 7 71 - -
Vifa5g00384 162 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 71 IPR013087 -
Vifa5g00384 162 Pfam C2H2-type zinc finger 44 68 - -
Vifa5g00384 162 MobiDBLite consensus disorder prediction 66 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00384 Vifa-Chr5 75022468 75022956 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa5g00384 zf-C2H2_6 1.7e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00384 - K09228 psat:127131701 154.836