Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00371 ATGACCAAAAAGTACGAAGGTTGTGCCGTAGGAATCGACCTTGGAACAACATATTCTTGTGTTGCTGTGTGGCTTGATGAGCACAATAGAGTAGAGATAATCCACAATGAACAAGGAAACAAGACCACACCTTCATTTGTTGCTTTCACTGATAATGAAAGGTTGATTGGTGATGCTGCTAAGAATCAGACAGCATCTAATGCAGAAAACACAGTCTTTGATGCCAAGAGATTAATTGGCAGGAAGTTTAATGATTCTGTTGTTAAAAAAGACATGATGTTGTGGCCATTCAAGGTGGTTGCCGGTGACAATGGCAAACCCCTGATTGTTGTTAAGTACAAAGGTCAGGAGAAGCATCTATGTGCTGAGGAAATTTCATCTATGATCCTCACAAAATTGCGGGAGATTGCGGAGAAATATCTGGACTCTCCAGTAAAGAATGTAGTTGTCACTGTGCCAGCTTATTTCTGTGACGCTCAGAGAAAAGCCACAATAGATGCCGGTGCTATTGCCGGTGTTAATGTTATCCGGATCATCAATGAACCAACTGCGGCAGCTCTTGCATATGGACTTGATAAGAGATCTAACTTTGTTGAAGAAAAAAATATTTTTGTTTTTGACCTTGGTGGTGGCACTTTTGATGTGTCGATCTTAACAATCAATGATAAGGTCTTCCAGGTTAAGGCCACGGGAGGAAACACTCACCTTGGAGGAGAGGACTTTGATAACCGGATGGTGAAGTACTTTGTAGATGAGTTCAAGAGGAAGAACAAAGTGGATATTACTAGGAACCCTAGGGCTTTGAGGAGGTTAAGAACAGCATGCGAAAGGGCAAAAAGGGTACTCTCTTTTTCTGTTGTCACCACTGTTGAGGTAGACTCTTTATTTCAAGGAATTGATTTCTTTTCATCAATTACTCGTGCCAAGTTTGAGGAAATCAATATGGACATTTTTGAGGAGTGTATGGAGACCGTCAAGAATTGTCTTACCGACTCTAAAATGAACAAGAGTACTGTAAATGAAGTTGTTCTTGTTGGTGGATCTTCTAGGATTCCCAAAGTTCAGCAACTATTGAAGGAATTTTTCAACGGAAAGGATTTATGCATGAGCATCAACCCTGATGAGGCTGTTGCTTATGGAGCAGCTGTACAAGCTGCTTTGTTGAGTGAAGGCTTTAAAAATGTTCCAAACTTGGTGCTGCGTGATGTTACACCATTGTCTCTTGGTAAGTTAGACTTAGGAGATATCATGAGTGTGATGATTCCTAGGAACTCTTGCATTCCCATCAAGATGACACAAAGTTTTGGAACAGTTGAAGATAACCAAACTTCCGTCTTGACTGAGGTTTACGAGGGTGAGAGAACTAAAGCCAGTGATAACAATCTGCTCGGTTCTTTTATTCTTTCTAACCTCCCGCCGGCACCTCGCGGCTATAGTATCAGTATAAGTTTTGCTATAGATGAAAATGGTATTTTGACTGTTACTGCTACGGACAAATCCACTGGTAATATGAACGAGATTACCATAAACAATTACAAAGAAAGGTTGGCTGCTGAAGAAATTAAAAAATTGATTACAGAAGCCGAGAACTTCCATATTGAAGATAAGAAATTCCTGAAGAAGGCGGAAGTAATGAATGCTTTAGATTACTGTGTTTACAAGATGAGGAATGCTTTAAATCAAACAAAGCATAATTCAAAGCTTCCGTCTAAAGATATCAACATGATCAATTCTGCAATTACGGAAGCCTCAAACTTGCTTGATAGTAGCCAGCCGGTTGAAATTGAGGTTCTTGAGAGTCATCTGAAGGATTTTGAGAGTATGCTTGAATATATTATTACAGGCAAAGAGTAA 1854 0.3981 MTKKYEGCAVGIDLGTTYSCVAVWLDEHNRVEIIHNEQGNKTTPSFVAFTDNERLIGDAAKNQTASNAENTVFDAKRLIGRKFNDSVVKKDMMLWPFKVVAGDNGKPLIVVKYKGQEKHLCAEEISSMILTKLREIAEKYLDSPVKNVVVTVPAYFCDAQRKATIDAGAIAGVNVIRIINEPTAAALAYGLDKRSNFVEEKNIFVFDLGGGTFDVSILTINDKVFQVKATGGNTHLGGEDFDNRMVKYFVDEFKRKNKVDITRNPRALRRLRTACERAKRVLSFSVVTTVEVDSLFQGIDFFSSITRAKFEEINMDIFEECMETVKNCLTDSKMNKSTVNEVVLVGGSSRIPKVQQLLKEFFNGKDLCMSINPDEAVAYGAAVQAALLSEGFKNVPNLVLRDVTPLSLGKLDLGDIMSVMIPRNSCIPIKMTQSFGTVEDNQTSVLTEVYEGERTKASDNNLLGSFILSNLPPAPRGYSISISFAIDENGILTVTATDKSTGNMNEITINNYKERLAAEEIKKLITEAENFHIEDKKFLKKAEVMNALDYCVYKMRNALNQTKHNSKLPSKDINMINSAITEASNLLDSSQPVEIEVLESHLKDFESMLEYIITGKE 617
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00371 617 PANTHER HEAT SHOCK PROTEIN 70KDA 9 567 IPR013126 GO:0005524|GO:0140662
Vifa5g00371 617 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 394 549 IPR029047 -
Vifa5g00371 617 FunFam heat shock 70 kDa protein-like 73 128 - -
Vifa5g00371 617 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Vifa5g00371 617 FunFam Heat shock protein 70 10 203 - -
Vifa5g00371 617 Gene3D Actin; Chain A, domain 4 237 320 - -
Vifa5g00371 617 ProSitePatterns Heat shock hsp70 proteins family signature 2. 205 218 IPR018181 -
Vifa5g00371 617 Gene3D - 10 386 - -
Vifa5g00371 617 SUPERFAMILY Actin-like ATPase domain 199 389 IPR043129 -
Vifa5g00371 617 FunFam Heat shock 70 kDa 237 320 - -
Vifa5g00371 617 Gene3D - 73 128 - -
Vifa5g00371 617 FunFam Heat shock 70 kDa protein 391 545 - -
Vifa5g00371 617 Coils Coil 509 529 - -
Vifa5g00371 617 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 393 545 IPR029047 -
Vifa5g00371 617 PRINTS 70kDa heat shock protein signature 211 221 - -
Vifa5g00371 617 PRINTS 70kDa heat shock protein signature 477 493 - -
Vifa5g00371 617 PRINTS 70kDa heat shock protein signature 8 21 - -
Vifa5g00371 617 PRINTS 70kDa heat shock protein signature 148 168 - -
Vifa5g00371 617 PRINTS 70kDa heat shock protein signature 339 355 - -
Vifa5g00371 617 PRINTS 70kDa heat shock protein signature 371 391 - -
Vifa5g00371 617 PRINTS 70kDa heat shock protein signature 397 416 - -
Vifa5g00371 617 PRINTS 70kDa heat shock protein signature 38 50 - -
Vifa5g00371 617 PRINTS 70kDa heat shock protein signature 60 68 - -
Vifa5g00371 617 Pfam Hsp70 protein 9 609 IPR013126 GO:0005524|GO:0140662
Vifa5g00371 617 SUPERFAMILY Actin-like ATPase domain 8 193 IPR043129 -
Vifa5g00371 617 ProSitePatterns Heat shock hsp70 proteins family signature 3. 342 356 IPR018181 -
Vifa5g00371 617 Gene3D - 546 616 IPR029048 -
Vifa5g00371 617 Gene3D - 194 368 - -
Vifa5g00371 617 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 543 614 IPR029048 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vifa5g00371 Vifa-Chr5 69327026 69328997 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00371 1 613 Calmodulin-binding Proteins AT3G12580 63.740 0.0 802
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00371 K03283 - gmx:102667578 878.241